ArticleScientific reports2015
An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.).
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.
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62 citing papers in PubMed.
- A genome-wide association analysis identifies a key candidate gene controlling plant growth habit in chickpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Identification and characterization of theFrontiers in plant science · 2026Article
- Assessing genetic diversity and performing genome-wide association studies (GWAS) using multiple marker types across desi, kabuli, and wild accessions in chickpea (Cicer arietinum L.).The plant genome · 2025Article
- Advancing Chickpea Breeding: Omics Insights for Targeted Abiotic Stress Mitigation and Genetic Enhancement.Biochemical genetics · 2025Review
- Mass Spectrometry Characterization of the SDS-PAGE Protein Profile of Legumins and Vicilins from Chickpea Seed.Foods (Basel, Switzerland) · 2024Article
- Oligo-barcode illuminates holocentric karyotype evolution inFrontiers in plant science · 2024Article
- The Progression in Developing Genomic Resources for Crop Improvement.Life (Basel, Switzerland) · 2023Review
- The developmental dynamics in cool season legumes with focus on chickpea.Plant molecular biology · 2023Review
- Genome-Wide Mining of the Tandem Duplicated Type III Polyketide Synthases and Their Expression, Structure Analysis ofInternational journal of molecular sciences · 2023Article
- Mining legume germplasm for genetic gains: An Indian perspective.Frontiers in genetics · 2023Review
- CicerSpTEdb2.0: An Upgrade of Cicer Species Transposable Elements Database.Methods in molecular biology (Clifton, N.J.) · 2023Article
- SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas.Molecular biology reports · 2022Article
- Advancing Grain Legumes Domestication and Evolution Studies with Genomics.Plant & cell physiology · 2022Review
- A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits.The Plant journal : for cell and molecular biology · 2022Article
- Article
- The genetic architecture of flowering time changes in pea from wild to crop.Journal of experimental botany · 2022Article
- Beyond a reference genome: pangenomes and population genomics of underutilized and orphan crops for future food and nutrition security.The New phytologist · 2022Review
- Article
- Defining the mutation sites in chickpea nodulation mutants PM233 and PM405.BMC plant biology · 2022Article
- Aldehyde Dehydrogenase 3 Is an Expanded Gene Family with Potential Adaptive Roles in Chickpea.Plants (Basel, Switzerland) · 2021Article
2 more citing papers are in PubMed but not listed here.
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Authors and funding
12 authors.
Funding
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Abstract
Chickpea (Cicer arietinum L.) is an important pulse legume crop. We previously reported a draft genome assembly of the desi chickpea cultivar ICC 4958. Here we report an advanced version of the ICC 4958 genome assembly (version 2.0) generated using additional sequence data and an improved genetic map. This resulted in 2.7-fold increase in the length of the pseudomolecules and substantial reduction of sequence gaps. The genome assembly covered more than 94% of the estimated gene space and predicted the presence of 30,257 protein-coding genes including 2230 and 133 genes encoding potential transcription factors (TF) and resistance gene homologs, respectively. Gene expression analysis identified several TF and chickpea-specific genes with tissue-specific expression and displayed functional diversification of the paralogous genes. Pairwise comparison of pseudomolecules in the desi (ICC 4958) and the earlier reported kabuli (CDC Frontier) chickpea assemblies showed an extensive local collinearity with incongruity in the placement of large sequence blocks along the linkage groups, apparently due to use of different genetic maps. Single nucleotide polymorphism (SNP)-based mining of intra-specific polymorphism identified more than four thousand SNPs differentiating a desi group and a kabuli group of chickpea genotypes.
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