Evidence map›Paper›PMID 26259534›Full record

ArticleRNA biology2015

Premature termination of GAT1 transcription explains paradoxical negative correlation between nitrogen-responsive mRNA, but constitutive low-level protein production.

Isabelle Georis, Georis Isabelle, Jennifer J Tate, Fabienne Vierendeels, Terrance G Cooper, Evelyne Dubois

Erratum issuedAbstract read
In one paragraph

Article in RNA biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

  • Erratum issued
    Erratum.2016 · Isabelle, Georis [corrected to Georis, Isabelle]
5 · Who and what money

Authors and funding

6 authors.

Isabelle Georis
Georis Isabellea Yeast Physiology ; Institut de Recherches Microbiologiques J. M. Wiame ; Laboratoire de Microbiologie Université Libre de Bruxelles ; Brussels , Belgium.
Jennifer J Tate
Fabienne Vierendeels
Terrance G Cooper
Evelyne Dubois

Funding

SYNTHESIS AND ASSEMBLY OF EUKARYOTIC MEMBRANESR01GM035642 · NIGMS · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI COOPER, TERRANCE G. · 1985 to 2015
$4.3M
NIGMS NIH HHS GM-35642NIGMS NIH HHS R01 GM035642
6 · The paper itself

Abstract

The first step in executing the genetic program of a cell is production of mRNA. In yeast, almost every gene is transcribed as multiple distinct isoforms, differing at their 5' and/or 3' termini. However, the implications and functional significance of the transcriptome-wide diversity of mRNA termini remains largely unexplored. In this paper, we show that the GAT1 gene, encoding a transcriptional activator of nitrogen-responsive catabolic genes, produces a variety of mRNAs differing in their 5' and 3' termini. Alternative transcription initiation leads to the constitutive, low level production of 2 full length proteins differing in their N-termini, whereas premature transcriptional termination generates a short, highly nitrogen catabolite repression- (NCR-) sensitive transcript that, as far as we can determine, is not translated under the growth conditions we used, but rather likely protects the cell from excess Gat1.

Indexed as

Transcription Termination, Genetic3' Untranslated Regions5' Untranslated RegionsAlternative SplicingAmino Acid SequenceBase SequenceBlotting, NorthernBlotting, WesternGATA Transcription FactorsGene Expression Regulation, FungalModels, GeneticMolecular Sequence DataNitrogenPhylogenyProtein BiosynthesisReverse Transcriptase Polymerase Chain Reaction3' Untranslated Regions5' Untranslated RegionsGAT1 protein, S cerevisiaeGATA Transcription FactorsNitrogenRNA, MessengerSaccharomyces cerevisiae Proteinsyeast, transcription, initiation, termination, GAT1

Identifiers

PMID26259534
PMCPMC4615157

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.