Evidence map›Paper›PMID 26259199›Full record

ArticlePlant science : an international journal of experimental plant biology2015

HY5 regulates nitrite reductase 1 (NIR1) and ammonium transporter1;2 (AMT1;2) in Arabidopsis seedlings.

Lifen Huang, Hongcheng Zhang, Huiyong Zhang, Xing Wang Deng, Ning Wei

Open access · hybridAbstract read
In one paragraph

Article in Plant science : an international journal of experimental plant biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
6.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 84 citations in OpenAlex.

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  7. Nitrate nitrogen uptake and metabolism inFrontiers in plant science · 2025
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  10. Transcriptome dynamics inFrontiers in plant science · 2024
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  11. Rice (Plants (Basel, Switzerland) · 2023
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  12. Review
  13. Scion-to-Rootstock Mobile Transcription FactorInternational journal of molecular sciences · 2022
    Article
  14. Review
  15. Frontiers in plant science · 2022
    Article
  16. Nitrogen Assimilation Related Genes inPlants (Basel, Switzerland) · 2021
    Article
  17. Light-Mediated Regulation of Leaf Senescence.International journal of molecular sciences · 2021
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Lifen HuangJiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China; Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520-8104, USA.
Hongcheng ZhangJiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China. Electronic address: hczhang@yzu.edu.cn.
Huiyong ZhangDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520-8104, USA; College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China.
Xing Wang DengDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520-8104, USA; State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, School of Advanced Agriculture Sciences and School of Life Sciences, Peking University, Beijing 100871, China.
Ning WeiDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520-8104, USA. Electronic address: ning.wei@yale.edu.
Yale University · USCenter for Life Sciences · CNYangzhou University · CN

Funding

LIGHT SIGNAL TRANDUCTION IN ARABIDOPSISR01GM047850 · NIGMS · YALE UNIVERSITY · PI WEI, NING · 1996 to 2018
$4.1M
NIGMS NIH HHS 2R01GM047850-23A1NIGMS NIH HHS R01 GM047850
6 · The paper itself

Abstract

HY5 (Long Hypocotyles 5) is a key transcription factor in Arabidopsis thaliana that has a pivotal role in seedling development. Soil nitrogen is an essential macronutrient, and its uptake, assimilation and metabolism are influenced by nutrient availability and by lights. To understand the role of HY5 in nitrogen assimilation pathways, we examined the phenotype as well as the expression of selected nitrogen assimilation-related genes in hy5 mutant grown under various nitrogen limiting and nitrogen sufficient conditions, or different light conditions. We report that HY5 positively regulates nitrite reductase gene NIR1 and negatively regulates the ammonium transporter gene AMT1;2 under all nitrogen and light conditions tested, while it affects several other genes in a nitrogen supply-dependent manner. HY5 is not required for light induction of NIR1, AMT1;2 and NIA genes, but it is necessary for high level expression of NIR1 and NIA under optimal nutrient and light conditions. In addition, nitrogen deficiency exacerbates the abnormal root system of hy5. Together, our results suggest that HY5 exhibits the growth-promoting activity only when sufficient nutrients, including lights, are provided, and that HY5 has a complex involvement in nitrogen acquisition and metabolism in Arabidopsis seedlings.

Indexed as

Ammonium CompoundsArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsCation Transport ProteinsGene Expression Regulation, PlantLightMutationNitrite ReductasesNitrogenNuclear ProteinsPhenotypePlant ProteinsPlant RootsRNA, MessengerSeedlingsAmmonium Compoundsammonium transporters, plantArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsCation Transport ProteinsHY5 protein, ArabidopsisNIR1 protein, ArabidopsisNitrite ReductasesNitrogenNuclear ProteinsPlant ProteinsRNA, MessengerAMT1 ;2HY5Light regulationNitrite reductase NIR1Nitrogen metabolismRoot development

Identifiers

PMID26259199
PMCPMC4719586
OpenAlexW1492586731

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.