Evidence map›Paper›PMID 26259071›Full record

ArticleNature communications2015

Genome-wide analysis of the genetic regulation of gene expression in human neutrophils.

Anand Kumar Andiappan, Rossella Melchiotti, Tuang Yeow Poh, Michelle Nah, Kia Joo Puan, Elena Vigano, Doreen Haase, Nurhashikin Yusof, Boris San Luis, Josephine Lum and 17 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Multi‑omics reveal neutrophil heterogeneity in sepsis (Review).International journal of molecular medicine · 2025
    Review
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  10. Article
  11. Review
  12. Article
  13. Heterogeneity of neutrophils.Nature reviews. Immunology · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 5 institutions in 2 countries.

Anand Kumar AndiappanSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Rossella MelchiottiSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Tuang Yeow PohSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Michelle NahSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Kia Joo PuanSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Elena ViganoSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Doreen HaaseSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Nurhashikin YusofSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Boris San LuisSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Josephine LumSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Dilip KumarSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Shihui FooSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Li ZhuangSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Anusha VasudevSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Astrid IrwantoDepartment of Human Genetics, Genome institute of Singapore (GIS), Singapore, Singapore.
Bernett LeeSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Alessandra NardinSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Hong LiuShandong Provincial Hospital for Skin Diseases, Shandong University, Jinan, Shandong, China.
Furen ZhangShandong Provincial Hospital for Skin Diseases, Shandong University, Jinan, Shandong, China.
John ConnollySingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Jianjun LiuDepartment of Human Genetics, Genome institute of Singapore (GIS), Singapore, Singapore.
Alessandra MortellaroSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.ORCID http://orcid.org/0000-0003-1744-2430
De Yun WangDepartment of Otolaryngology, National University of Singapore, Singapore.
Michael PoidingerSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.ORCID http://orcid.org/0000-0002-1047-2277
Anis LarbiSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Francesca ZolezziSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Olaf RotzschkeSingapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), #04-06, 8A Biomedical Grove, Singapore, Singapore.
Agency for Science, Technology and Research · SGShandong University · CNAnhui Medical University · CNGenome Institute of Singapore · SGNational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neutrophils are an abundant immune cell type involved in both antimicrobial defence and autoimmunity. The regulation of their gene expression, however, is still largely unknown. Here we report an eQTL study on isolated neutrophils from 114 healthy individuals of Chinese ethnicity, identifying 21,210 eQTLs on 832 unique genes. Unsupervised clustering analysis of these eQTLs confirms their role in inflammatory responses and immunological diseases but also indicates strong involvement in dermatological pathologies. One of the strongest eQTL identified (rs2058660) is also the tagSNP of a linkage block reported to affect leprosy and Crohn's disease in opposite directions. In a functional study, we can link the C allele with low expression of the β-chain of IL18-receptor (IL18RAP). In neutrophils, this results in a reduced responsiveness to IL-18, detected both on the RNA and protein level. Thus, the polymorphic regulation of human neutrophils can impact beneficial as well as pathological inflammatory responses.

Indexed as

Genome-Wide Association StudyAdolescentAdultCluster AnalysisFemaleGene Expression RegulationGenetic LinkageGenotypeHumansInflammationMaleNeutrophilsPolymorphism, Single NucleotideQuantitative Trait LociYoung Adult

Identifiers

PMID26259071
PMCPMC4918343
OpenAlexW2273582401

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.