Evidence map›Paper›PMID 26259066›Full record

ArticleNature communications2015

Hydride bridge in [NiFe]-hydrogenase observed by nuclear resonance vibrational spectroscopy.

Hideaki Ogata, Tobias Krämer, Hongxin Wang, David Schilter, Vladimir Pelmenschikov, Maurice van Gastel, Frank Neese, Thomas B Rauchfuss, Leland B Gee, Aubrey D Scott and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Nature communications · 2025
    Article
  6. Nuclear resonant vibrational spectroscopy on Na-FeSpectroscopy letters; an international journal for rapid communication · 2025
    Article
  7. ATP-Triggered Fe(CN)Journal of the American Chemical Society · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. A personal account on 25 years of scientific literature on [FeFe]-hydrogenase.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2023
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. The EChemistry (Weinheim an der Bergstrasse, Germany) · 2021
    Article
  18. Article
  19. HRSC advances · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Hideaki OgataMax Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany.
Tobias KrämerMax Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany.
Hongxin Wang1] Department of Chemistry, University of California, Davis, California 95616, USA [2] Division of Physical Biosciences, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
David SchilterDepartment of Chemistry, University of Illinois, Urbana, Illinois 61801, USA.ORCID 0000000257206806
Vladimir PelmenschikovInstitut für Chemie, Technische Universität Berlin, Berlin 10623, Germany.
Maurice van GastelMax Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany.
Frank NeeseMax Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany.
Thomas B RauchfussDepartment of Chemistry, University of Illinois, Urbana, Illinois 61801, USA.
Leland B GeeDepartment of Chemistry, University of California, Davis, California 95616, USA.ORCID 0000000258173997
Aubrey D ScottDepartment of Chemistry, University of California, Davis, California 95616, USA.
Yoshitaka YodaDivision of Research and Utilization, SPring-8/JASRI, Hyogo 679-5198, Japan.
Yoshihito TanakaMaterials Dynamics Laboratory, RIKEN SPring-8, Hyogo 679-5148, Japan.
Wolfgang LubitzMax Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany.
Stephen P Cramer1] Department of Chemistry, University of California, Davis, California 95616, USA [2] Division of Physical Biosciences, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

Funding

X-Ray Raman and Vibrational Mossbauer of MetalloproteinsR01GM065440 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CRAMER, STEPHEN P. · 2002 to 2025
$7.3M
A HIGH MAGNETIC FIELD MOSSBAUER INSTRUMENTS10RR023656 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CRAMER, STEPHEN P. · 2008 to 2008
$264k
NCRR NIH HHS S10 RR023656NIGMS NIH HHS GM-65440NIGMS NIH HHS R01 GM065440
6 · The paper itself

Abstract

The metabolism of many anaerobes relies on [NiFe]-hydrogenases, whose characterization when bound to substrates has proven non-trivial. Presented here is direct evidence for a hydride bridge in the active site of the (57)Fe-labelled fully reduced Ni-R form of Desulfovibrio vulgaris Miyazaki F [NiFe]-hydrogenase. A unique 'wagging' mode involving H(-) motion perpendicular to the Ni(μ-H)(57)Fe plane was studied using (57)Fe-specific nuclear resonance vibrational spectroscopy and density functional theory (DFT) calculations. On Ni(μ-D)(57)Fe deuteride substitution, this wagging causes a characteristic perturbation of Fe-CO/CN bands. Spectra have been interpreted by comparison with Ni(μ-H/D)(57)Fe enzyme mimics [(dppe)Ni(μ-pdt)(μ-H/D)(57)Fe(CO)3](+) and DFT calculations, which collectively indicate a low-spin Ni(II)(μ-H)Fe(II) core for Ni-R, with H(-) binding Ni more tightly than Fe. The present methodology is also relevant to characterizing Fe-H moieties in other important natural and synthetic catalysts.

Indexed as

Desulfovibrio vulgarisHydrogenaseMagnetic Resonance SpectroscopyHydrogenasenickel-iron hydrogenase

Identifiers

PMID26259066
PMCPMC4531378

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.