ArticlePloS one2015
Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa).
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed.
- Nano-Molybdenum Disulfide Enhances Antioxidant Defense and Aroma Formation in Fragrant Rice Under Cadmium Stress via Modulation of 2-Acetyl-1-Pyrroline Biosynthesis.Antioxidants (Basel, Switzerland) · 2026Article
- Genome-wide association study reveals novel SNP loci and candidate genes linked to flowering time in upland cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Breeding a novel cauliflower with exceptional fragrance.Molecular horticulture · 2025Article
- Molecular insights into salt tolerance in Dunaliella tertiolecta involving two betaine aldehyde dehydrogenases.World journal of microbiology & biotechnology · 2024Article
- Characterization of a Drought-Induced Betaine Aldehyde Dehydrogenase GenePlants (Basel, Switzerland) · 2024Article
- Multiple mutations inJournal of genetics · 2024Article
- Article
- Multi-omics analysis reveals the genetic basis of rice fragrance mediated by betaine aldehyde dehydrogenase 2.Journal of advanced research · 2022Article
- Combined Metabolomic and Quantitative RT-PCR Analyses Revealed the Synthetic Differences of 2-Acetyl-1-pyrroline in Aromatic and Non-Aromatic Vegetable Soybeans.International journal of molecular sciences · 2022Article
- Insights of Improved Aroma under Additional Nitrogen Application at Booting Stage in Fragrant Rice.Genes · 2022Article
- Molecular profiling ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Haplotype Analysis ofInternational journal of molecular sciences · 2021Article
- Genetic diversity and population structure of advanced clones selected over forty years by a potato breeding program in the USA.Scientific reports · 2021Article
- Genomic analyses reveal the genetic basis of early maturity and identification of loci and candidate genes in upland cotton (Gossypium hirsutum L.).Plant biotechnology journal · 2021Article
- Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding.Genes & genomics · 2019Review
- Effects of milling on aromatics, lipophilic phytonutrients, and fatty acids in unprocessed white rice of scented rice 'Cheonjihyang-1-seFood science and biotechnology · 2018Article
- Population genomics identifies the origin and signatures of selection of Korean weedy rice.Plant biotechnology journal · 2017Article
- Genome-wide association study of eating and cooking qualities in different subpopulations of rice (Oryza sativa L.).BMC genomics · 2016Article
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6 authors.
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Abstract
BADH1 and BADH2 are two homologous genes, encoding betaine aldehyde dehydrogenase in rice. In the present study, we scanned BADHs sequences of 295 rice cultivars, and 10 wild rice accessions to determine the polymorphisms, gene functions and domestication of these two genes. A total of 16 alleles for BADH1 and 10 alleles for BADH2 were detected in transcribed region of cultivars and wild species. Association study showed that BADH1 has significant correlation with salt tolerance in rice during germination stage, the SNP (T/A) in exon 4 is highly correlated with salt tolerance index (STI) (P<10(-4)). While, BADH2 was only responsible for rice fragrance, of which two BADH2 alleles (8 bp deletion in exon 7 and C/T SNP in exon 13) explain 97% of aroma variation in our germplasm. Theses indicate that there are no overlapping functions between the two homologous genes. In addition, a large LD block was detected in BADH2 region, however, there was no large LD blocks in a 4-Mb region of BADH1. We found that BADH2 region only showed significant bias in Tajima's D value from the balance. Extended haplotype homozygosity study revealed fragrant accessions had a large LD block that extended around the mutation site (8 bp deletion in exon 7) of BADH2, while both of the BADH1 alleles (T/A in exon 4) did not show large extended LD block. All these results suggested that BADH2 was domesticated during rice evolution, while BADH1 was not selected by human beings.
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