Evidence map›Paper›PMID 26257393›Full record

ArticleProtein science : a publication of the Protein Society2015

Large-scale identification of membrane proteins with properties favorable for crystallization.

Jared Kim, Allison Kagawa, Kellie Kurasaki, Niloufar Ataie, Il Kyu Cho, Qing X Li, Ho Leung Ng

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jared KimDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, 96822.
Allison KagawaDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, 96822.
Kellie KurasakiDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, 96822.
Niloufar AtaieDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, 96822.
Il Kyu ChoDepartment of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, Hawaii, 96822.
Qing X LiDepartment of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, Hawaii, 96822.
Ho Leung NgDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, 96822.
University of Hawaiʻi at Mānoa · USUniversity of Hawaii Cancer Center

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Membrane protein crystallography is notoriously difficult due to challenges in protein expression and issues of degradation and structural stability. We have developed a novel method for large-scale screening of native sources for integral membrane proteins that have intrinsic biochemical properties favorable for crystallization. Highly expressed membrane proteins that are thermally stable and nonaggregating in detergent solutions were identified by mass spectrometry from Escherichia coli, Saccharomyces cerevisiae, and Sus scrofa cerebrum. Many of the membrane proteins identified had been crystallized previously, supporting the promise of the approach. Most identified proteins have known functions and include high-value targets such as transporters and ATPases. To validate the method, we recombinantly expressed and purified the yeast protein, Yop1, which is responsible for endoplasmic reticulum curvature. We demonstrate that Yop1 can be purified with the detergent dodecylmaltoside without aggregating.

Indexed as

AnimalsCrystallizationEscherichia coli ProteinsMass SpectrometryMembrane ProteinsProteomicsSwineEscherichia coli ProteinsMembrane Proteinscrystallizationmass spectrometrymembrane proteinsproteomics

Identifiers

PMID26257393
PMCPMC4622209
OpenAlexW1917537349

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.