Evidence map›Paper›PMID 26257390›Full record

ArticleProtein science : a publication of the Protein Society2015

Intracellular pH modulates quinary structure.

Rachel D Cohen, Alex J Guseman, Gary J Pielak

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. The Protein Unfolded State: One, No One and One Hundred Thousand.Journal of the American Chemical Society · 2022
    Review
  8. In-cell destabilization of a homodimeric protein complex detected by DEER spectroscopy.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Diffusive protein interactions in human versus bacterial cells.Current research in structural biology · 2020
    Article
  10. Proteins: "Boil 'Em, Mash 'Em, Stick 'Em in a Stew".The journal of physical chemistry. B · 2019
    Review
  11. International journal of molecular sciences · 2019
    Review
  12. Quinary interactions with an unfolded state ensemble.Protein science : a publication of the Protein Society · 2017
    Article
  13. Article
  14. Cosolutes, Crowding, and Protein Folding Kinetics.The journal of physical chemistry. B · 2017
    Article
  15. A cell is more than the sum of its (dilute) parts: A brief history of quinary structure.Protein science : a publication of the Protein Society · 2017
    Review
  16. Review
  17. Article
  18. Protein charge determination and implications for interactions in cell extracts.Protein science : a publication of the Protein Society · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Rachel D CohenDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina, 27599.
Alex J GusemanDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina, 27599.
Gary J PielakDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina, 27599.
University of North Carolina at Chapel Hill · USUNC Lineberger Comprehensive Cancer Center

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NMR spectroscopy can provide information about proteins in living cells. pH is an important characteristic of the intracellular environment because it modulates key protein properties such as net charge and stability. Here, we show that pH modulates quinary interactions, the weak, ubiquitous interactions between proteins and other cellular macromolecules. We use the K10H variant of the B domain of protein G (GB1, 6.2 kDa) as a pH reporter in Escherichia coli cells. By controlling the intracellular pH, we show that quinary interactions influence the quality of in-cell (15) N-(1) H HSQC NMR spectra. At low pH, the quality is degraded because the increase in attractive interactions between E. coli proteins and GB1 slows GB1 tumbling and broadens its crosspeaks. The results demonstrate the importance of quinary interactions for furthering our understanding of protein chemistry in living cells.

Indexed as

ProtonsAmidesEscherichia coli ProteinsHydrogen-Ion ConcentrationIntracellular SpaceNuclear Magnetic Resonance, BiomolecularProtein StabilityAmidesEscherichia coli ProteinsProtonsamide proton exchangein-cell NMRmacromolecular crowdingpHprotein stabilityquinary interactions

Identifiers

PMID26257390
PMCPMC4622208
OpenAlexW1961845160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.