Evidence map›Paper›PMID 26256693›Full record

ArticleJournal of the American Chemical Society2015

Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.

John M Franck, Yuan Ding, Katherine Stone, Peter Z Qin, Songi Han

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. A water-pinning hotspot drives templated tau aggregation.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Mapping the diffusion pattern ofScientific reports · 2023
    Article
  7. Article
  8. Article
  9. Review
  10. Long-range DNA-water interactions.Biophysical journal · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. DNA's Chiral Spine of Hydration.ACS central science · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

John M FranckDepartment of Chemistry and Biochemistry, University of California , Santa Barbara, California 93106, United States.
Yuan DingDepartment of Chemistry, University of Southern California , Los Angeles, California, 90089 United States.
Katherine StoneDepartment of Chemistry and Biochemistry, University of California , Santa Barbara, California 93106, United States.
Peter Z QinDepartment of Chemistry, University of Southern California , Los Angeles, California, 90089 United States.
Songi HanDepartment of Chemistry and Biochemistry, University of California , Santa Barbara, California 93106, United States.

Funding

Probing early protein aggregation mechanisms and their relationship to disease efDP2OD008702 · OD · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI HAN, SONGI · 2011 to 2011
$2.3M
NIH HHS DP2 OD008702
6 · The paper itself

Abstract

The emerging Overhauser effect dynamic nuclear polarization (ODNP) technique measures the translational mobility of water within the vicinity (5-15 Å) of preselected sites. The work presented here expands the capabilities of the ODNP technique and illuminates an important, previously unseen, property of the translational diffusion dynamics of water at the surface of DNA duplexes. We attach nitroxide radicals (i.e., spin labels) to multiple phosphate backbone positions of DNA duplexes, allowing ODNP to measure the hydration dynamics at select positions along the DNA surface. With a novel approach to ODNP analysis, we isolate the contributions of water molecules at these sites that undergo free translational diffusion from water molecules that either loosely bind to or exchange protons with the DNA. The results reveal that a significant population of water in a localized volume adjacent to the DNA surface exhibits fast, bulk-like characteristics and moves unusually rapidly compared to water found in similar probe volumes near protein and membrane surfaces. Control studies show that the observation of these characteristics are upheld even when the DNA duplex is tethered to streptavidin or the mobility of the nitroxides is altered. This implies that, as compared to protein or lipid surfaces, it is an intrinsic feature of the DNA duplex surface that it interacts only weakly with a significant fraction of the surface hydration water network. The displacement of this translationally mobile water is energetically less costly than that of more strongly bound water by up to several kBT and thus can lower the activation barrier for interactions involving the DNA surface.

Indexed as

Base SequenceDiffusionDNAModels, MolecularNucleic Acid ConformationRotationSpin LabelsSurface PropertiesWaterDNASpin LabelsWater

Identifiers

PMID26256693
PMCPMC4656248

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.