Evidence map›Paper›PMID 26256301›Full record

ArticleMarine biotechnology (New York, N.Y.)2015

Structure and Characterization of Eriphia verrucosa Hemocyanin.

A Dolashki, M Radkova, E Todorovska, M Ivanov, S Stevanovic, L Molin, P Traldi, W Voelter, P Dolashka

Abstract read
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In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

A DolashkiInstitute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, G. Bonchev str. 9, Sofia, 1113, Bulgaria.
M RadkovaAgroBioInstitute, 8 Dragan Tsankov, Str., 1164, Sofia, Bulgaria.
E TodorovskaAgroBioInstitute, 8 Dragan Tsankov, Str., 1164, Sofia, Bulgaria.
M IvanovAgroBioInstitute, 8 Dragan Tsankov, Str., 1164, Sofia, Bulgaria.
S StevanovicInstitute for Cell Biology, Department of Immunology, University of Tübingen, Auf der Morgenstelle 15, D-72076, Tϋbingen, Germany.
L MolinCNR-ISTM, Corso Stati Uniti 4, 35129, Padova, Italy.
P TraldiCNR-ISTM, Corso Stati Uniti 4, 35129, Padova, Italy.
W VoelterInterfacultary Institute of Biochemistry, University of Tϋbingen, Hoppe-Seyler-Str. 4, D-72076, Tϋbingen, Germany.
P DolashkaInstitute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, G. Bonchev str. 9, Sofia, 1113, Bulgaria. pda54@abv.bg.
Agrobioinstitute · BGUniversity of Tübingen · DEInstitute of Organic Chemistry with Centre of Phytochemistry · BG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arthropod hemocyanins (Hcs) are a family of large extracellular oxygen-transporting proteins with high molecular mass and hexameric or multi-hexameric molecular assembly. This study reports for the first time the isolation and characterization of the structure of an arthropod hemocyanin from crab Eriphia verrucosa (EvH) living in the Black Sea. Its oligomeric quaternary structure is based on different arrangements of a basic 6 × 75 kDa hexameric unit, and four of them (EvH1, EvH2, EvH3, and EvH4) were identified using ion-exchange chromatography. Subunit 3 (EvH3) shows high similarity scores (75.0, 87.5, 91.7, and 75.0 %, respectively) by comparison of the N-terminal sequence of subunit 1 from Cancer pagurus of the North Sea (Cp1), subunits 3 and 6 of Cancer magister (Cm3 and Cm6), and subunit 2 of Carcinus aestuarii (CaSS2), respectively. Moreover, a partial cDNA sequence (1309 bp) of E. verrucosa hemocyanin encoding a protein of 435 amino acids was isolated. The deduced amino acid sequence shows a high degree of similarity with subunits 3, 4, 5, and 6 of C. magister (81-84 %). Most of the hemocyanins are glycosylated, and three putative O-linkage sites were identified in the partial amino acid sequence of EvH at positions 444-446, 478-480, and 547-549, respectively. The higher stability of native Hc in comparison to its subunit EvH4 as determined by circular dichroism (CD) could be explained with the formation of a stabilizing quaternary structure.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBinding SitesBrachyuraChromatography, High Pressure LiquidChromatography, Ion ExchangeCloning, MolecularFemaleHemocyaninsMolecular Sequence DataPolymerase Chain ReactionProtein Structure, QuaternarySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationHemocyaninscDNA sequenceEriphia verrucosa hemocyaninGlycosylation sitesQuaternary structures

Identifiers

PMID26256301
OpenAlexW1124027965

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.