Evidence map›Paper›PMID 26254147›Full record

ReviewTrends in immunology2015

AID targeting: old mysteries and new challenges.

Vivek Chandra, Alexandra Bortnick, Cornelis Murre

Open access · greenAbstract readReview
In one paragraph

Review in Trends in immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Struggle within: evolution and ecology of somatic cell populations.Cellular and molecular life sciences : CMLS · 2021
    Review
  15. Detection of Genomic Uracil Patterns.International journal of molecular sciences · 2021
    Review
  16. Article
  17. Activation-induced cytidine deaminase: in sickness and in health.Journal of cancer research and clinical oncology · 2020
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Vivek ChandraDepartment of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093-0377, USA.
Alexandra BortnickDepartment of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093-0377, USA.
Cornelis MurreDepartment of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093-0377, USA. Electronic address: cmurre@ucsd.edu.
University of California, San Diego · US

Funding

The 3D-Structures of the Immunoglobulin Heavy Chain LocusR01AI082850 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MURRE, CORNELIS · 2009 to 2024
$5.4M
The 3D-Structures of the Pre-Pro-B and Pro-B Cell GenomesR01AI100880 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MURRE, CORNELIS · 2012 to 2022
$4.1M
E-proteins and EBF1 in B cell differentiationR01AI109599 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MURRE, CORNELIS · 2014 to 2017
$1.6M
NIAID NIH HHS R01 AI082850NIAID NIH HHS R01 AI100880NIAID NIH HHS R01 AI109599NIAID NIH HHS R01 AI109599-25
6 · The paper itself

Abstract

Activation-induced cytidine deaminase (AID) mediates cytosine deamination and underlies two central processes in antibody diversification: somatic hypermutation and class-switch recombination. AID deamination is not exclusive to immunoglobulin loci; it can instigate DNA lesions in non-immunoglobulin genes and thus stringent checks are in place to constrain and restrict its activity. Recent findings have provided new insights into the mechanisms that target AID activity to specific genomic regions, revealing an involvement for noncoding RNAs associated with polymerase pausing and with enhancer transcription as well as genomic architecture. We review these findings and integrate them into a model for multilevel regulation of AID expression and targeting in immunoglobulin and non-immunoglobulin loci. Within this framework we discuss gaps in understanding, and outline important areas of further research.

Indexed as

Gene Expression RegulationAICDA (Activation-Induced Cytidine Deaminase)AnimalsAntibody FormationCytidine DeaminaseGenetic LociHumansImmunoglobulin Class SwitchingImmunoglobulinsProtein BindingProtein Interaction Domains and MotifsTranscription FactorsAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseImmunoglobulinsTranscription FactorsAIDCSRimmunoglobulin lociSHM

Identifiers

PMID26254147
PMCPMC4567449
OpenAlexW1912001164

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.