Evidence map›Paper›PMID 26253704›Full record

ArticleBMC plant biology2015

Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues.

Åsa Grimberg, Anders S Carlsson, Salla Marttila, Rishikesh Bhalerao, Per Hofvander

Abstract read
In one paragraph

Article in BMC plant biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Oil as a Hindrance to Oat (Foods (Basel, Switzerland) · 2026
    Review
  4. Identification ofPlant biotechnology (Tokyo, Japan) · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Lipid droplets inFrontiers in plant science · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Ectopic Expression ofPlants (Basel, Switzerland) · 2023
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Åsa GrimbergDepartment of Plant Breeding, Swedish University of Agricultural Sciences, Växtskyddsvägen 1, P.O. Box 101, SE-23053, Alnarp, Sweden. Asa.Grimberg@slu.se.
Anders S CarlssonDepartment of Plant Breeding, Swedish University of Agricultural Sciences, Växtskyddsvägen 1, P.O. Box 101, SE-23053, Alnarp, Sweden. Anders.Carlsson@slu.se.
Salla MarttilaDepartment of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden. Salla.Marttila@slu.se.
Rishikesh BhaleraoDepartment of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Umeå, Sweden. Rishi.Bhalerao@slu.se.
Per HofvanderDepartment of Plant Breeding, Swedish University of Agricultural Sciences, Växtskyddsvägen 1, P.O. Box 101, SE-23053, Alnarp, Sweden. Per.Hofvander@slu.se.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCarbon accumulation and remobilization are essential mechanisms in plants to ensure energy transfer between plant tissues with different functions or metabolic needs and to support new generations. Knowledge about the regulation of carbon allocation into oil (triacylglycerol) in plant storage tissue can be of great economic and environmental importance for developing new high-yielding oil crops. Here, the effect on global gene expression as well as on physiological changes in leaves transiently expressing five homologs of the transcription factor WRINKLED1 (WRI1) originating from diverse species and tissues; Arabidopsis thaliana and potato (Solanum tuberosum) seed embryo, poplar (Populus trichocarpa) stem cambium, oat (Avena sativa) grain endosperm, and nutsedge (Cyperus esculentus) tuber parenchyma, were studied by agroinfiltration in Nicotiana benthamiana.

resultsAll WRI1 homologs induced oil accumulation when expressed in leaf tissue. Transcriptome sequencing revealed that all homologs induced the same general patterns with a drastic shift in gene expression profiles of leaves from that of a typical source tissue to a source-limited sink-like tissue: Transcripts encoding enzymes for plastid uptake and metabolism of phosphoenolpyruvate, fatty acid and oil biosynthesis were up-regulated, as were also transcripts encoding starch degradation. Transcripts encoding enzymes in photosynthesis and starch synthesis were instead down-regulated. Moreover, transcripts representing fatty acid degradation were up-regulated indicating that fatty acids might be degraded to feed the increased need to channel carbons into fatty acid synthesis creating a futile cycle. RT-qPCR analysis of leaves expressing Arabidopsis WRI1 showed the temporal trends of transcripts selected as 'markers' for key metabolic pathways one to five days after agroinfiltration. Chlorophyll fluorescence measurements of leaves expressing Arabidopsis WRI1 showed a significant decrease in photosynthesis, even though effect on starch content could not be observed.

conclusionsThis data gives for the first time a general view on the transcriptional transitions in leaf tissue upon induction of oil synthesis by WRI1. This yields important information about what effects WRI1 may exert on global gene expression during seed and embryo development. The results suggest why high oil content in leaf tissue cannot be achieved by solely transcriptional activation by WRI1, which can be essential knowledge in the development of new high-yielding oil crops.

Indexed as

Gene Expression Regulation, PlantArabidopsis ProteinsAvenaCarbohydrate MetabolismCyperusNicotianaPlant LeavesPlants, Genetically ModifiedPopulusReal-Time Polymerase Chain ReactionSolanum tuberosumTranscription FactorsArabidopsis ProteinsTranscription FactorsWRINKLED1 protein, Arabidopsis

Identifiers

PMID26253704
PMCPMC4528408

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.