Evidence map›Paper›PMID 26252219›Full record

ArticlePLoS pathogens2015

Widespread Reassortment Shapes the Evolution and Epidemiology of Bluetongue Virus following European Invasion.

Kyriaki Nomikou, Joseph Hughes, Rachael Wash, Paul Kellam, Emmanuel Breard, Stéphan Zientara, Massimo Palmarini, Roman Biek, Peter Mertens

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
31.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 130 citations in OpenAlex.

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24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Kyriaki NomikouVector-Borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Woking, United Kingdom.
Joseph HughesMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.
Rachael WashWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Paul KellamWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom; Division of Infection and Immunity, Research Department of Infection, University College London, London, United Kingdom.
Emmanuel BreardFrench Agency for Food, Environment and Occupational Health and Safety (ANSES), Maisons-Alfort, France.
Stéphan ZientaraFrench Agency for Food, Environment and Occupational Health and Safety (ANSES), Maisons-Alfort, France.
Massimo PalmariniMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.
Roman BiekMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom; Institute of Biodiversity, Animal Health and Comparative Medicine, Boyd Orr Centre for Population and Ecosystem Health, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.
Peter MertensVector-Borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Woking, United Kingdom.
Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail · FRMRC University of Glasgow Centre for Virus Research · GBThe Pirbright Institute · GBGlasgow Centre for Population Health · GBUniversity College London · GBWellcome Sanger Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/I/00001144Medical Research Council G0801822Wellcome TrustWellcome Trust 092806/B/10/Z
6 · The paper itself

Abstract

Genetic exchange by a process of genome-segment 'reassortment' represents an important mechanism for evolutionary change in all viruses with segmented genomes, yet in many cases a detailed understanding of its frequency and biological consequences is lacking. We provide a comprehensive assessment of reassortment in bluetongue virus (BTV), a globally important insect-borne pathogen of livestock, during recent outbreaks in Europe. Full-genome sequences were generated and analysed for over 150 isolates belonging to the different BTV serotypes that have emerged in the region over the last 5 decades. Based on this novel dataset we confirm that reassortment is a frequent process that plays an important and on-going role in evolution of the virus. We found evidence for reassortment in all ten segments without a significant bias towards any particular segment. However, we observed biases in the relative frequency at which particular segments were associated with each other during reassortment. This points to selective constraints possibly caused by functional relationships between individual proteins or genome segments and genome-wide epistatic interactions. Sites under positive selection were more likely to undergo amino acid changes in newly reassorted viruses, providing additional evidence for adaptive dynamics as a consequence of reassortment. We show that the live attenuated vaccines recently used in Europe have repeatedly reassorted with field strains, contributing to their genotypic, and potentially phenotypic, variability. The high degree of plasticity seen in the BTV genome in terms of segment origin suggests that current classification schemes that are based primarily on serotype, which is determined by only a single genome segment, are inadequate. Our work highlights the need for a better understanding of the mechanisms and epidemiological consequences of reassortment in BTV, as well as other segmented RNA viruses.

Indexed as

BluetongueBluetongue virusEuropeEvolution, MolecularMolecular Sequence DataPhylogenyReal-Time Polymerase Chain ReactionReassortant Viruses

Identifiers

PMID26252219
PMCPMC4529188
OpenAlexW2133445196

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.