Evidence map›Paper›PMID 26251830›Full record

ArticleEmerging microbes & infections2015

Novel katG mutations causing isoniazid resistance in clinical M. tuberculosis isolates.

Jessica N Torres, Lynthia V Paul, Timothy C Rodwell, Thomas C Victor, Anu M Amallraja, Afif Elghraoui, Amy P Goodmanson, Sarah M Ramirez-Busby, Ashu Chawla, Victoria Zadorozhny and 8 more

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 2 pooled it
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 2 syntheses or guidelines pooled it, 95 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
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  6. Review
  7. Article
  8. Identification ofInfection and drug resistance · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Novel and reported compensatory mutations inFrontiers in microbiology · 2023
    Article
  14. Article
  15. Review
  16. Ultrasensitive Detection of Multidrug-ResistantInternational journal of molecular sciences · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 4 countries.

Jessica N TorresBiological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA.
Lynthia V PaulSA MRC Centre for TB Research, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Stellenbosch University , Tygerberg, Cape Town 7505, South Africa.
Timothy C RodwellDepartment of Medicine, University of California , San Diego, La Jolla, CA 92093, USA.
Thomas C VictorSA MRC Centre for TB Research, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Stellenbosch University , Tygerberg, Cape Town 7505, South Africa.
Anu M AmallrajaBiological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA.
Afif ElghraouiBiological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA.
Amy P GoodmansonBiological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA.
Sarah M Ramirez-BusbyBiological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA.
Ashu ChawlaBiological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA.
Victoria ZadorozhnyBiological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA.
Elizabeth M StreicherSA MRC Centre for TB Research, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Stellenbosch University , Tygerberg, Cape Town 7505, South Africa.
Frederick A SirgelSA MRC Centre for TB Research, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Stellenbosch University , Tygerberg, Cape Town 7505, South Africa.
Donald CatanzaroDepartment of Biological Sciences, University of Arkansas , Fayetteville, AR, 72701, USA.
Camilla RodriguesP. D. Hinduja National Hospital & Medical Research Centre, Department of Microbiology , Veer Savarkar Marg, Mahim, Mumbai 400 016, India.
Maria Tarcela GlerTropical Disease Foundation , Makati 1230, Philippines.
Valeru CruduMicrobiology and Morphology Laboratory, Institute of Phthisiopneumology , Chisinau, MD 2001, Moldova.
Antonino CatanzaroDepartment of Medicine, University of California , San Diego, La Jolla, CA 92093, USA.
Faramarz ValafarBiological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA.
San Diego State University · USStellenbosch University · ZAUniversity of California, San Diego · USNational Hospital · INTropical Disease Foundation · PHUniversity of Arkansas at Fayetteville · US

Funding

Rapid Tests for Drug Resistance to Detect Extensively Drug-Resistant TuberculosisU01AI082229 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CATANZARO, ANTONINO · 2009 to 2013
$10.9M
An Integrated Tabletop Platform for Rapid Detection of XDR-TB in Clinical SamplesR01AI111435 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RODWELL, TIMOTHY CHARLES · 2014 to 2018
$5.4M
Evolutionary and Functional Significance of Novel Mutations in MDR-XDR TBR01AI105185 · NIAID · SAN DIEGO STATE UNIVERSITY · PI VALAFAR, FARAMARZ · 2013 to 2021
$5.3M
NIAID NIH HHS R01 AI105185NIAID NIH HHS R01AI105185NIAID NIH HHS R01 AI111435NIAID NIH HHS R01AI111435NIAID NIH HHS U01 AI082229NIAID NIH HHS U01AI082229
6 · The paper itself

Abstract

We report the discovery and confirmation of 23 novel mutations with previously undocumented role in isoniazid (INH) drug resistance, in catalase-peroxidase (katG) gene of Mycobacterium tuberculosis (Mtb) isolates. With these mutations, a synonymous mutation in fabG1 (g609a), and two canonical mutations, we were able to explain 98% of the phenotypic resistance observed in 366 clinical Mtb isolates collected from four high tuberculosis (TB)-burden countries: India, Moldova, Philippines, and South Africa. We conducted overlapping targeted and whole-genome sequencing for variant discovery in all clinical isolates with a variety of INH-resistant phenotypes. Our analysis showed that just two canonical mutations (katG 315AGC-ACC and inhA promoter-15C-T) identified 89.5% of resistance phenotypes in our collection. Inclusion of the 23 novel mutations reported here, and the previously documented point mutation in fabG1, increased the sensitivity of these mutations as markers of INH resistance to 98%. Only six (2%) of the 332 resistant isolates in our collection did not harbor one or more of these mutations. The third most prevalent substitution, at inhA promoter position -8, present in 39 resistant isolates, was of no diagnostic significance since it always co-occurred with katG 315. 79% of our isolates harboring novel mutations belong to genetic group 1 indicating a higher tendency for this group to go down an uncommon evolutionary path and evade molecular diagnostics. The results of this study contribute to our understanding of the mechanisms of INH resistance in Mtb isolates that lack the canonical mutations and could improve the sensitivity of next generation molecular diagnostics.

Indexed as

Antitubercular AgentsBacterial ProteinsCatalaseDrug Resistance, BacterialHumansIsoniazidMicrobial Sensitivity TestsMutationMycobacterium tuberculosisOxidoreductasesPromoter Regions, GeneticTuberculosisAntitubercular AgentsBacterial ProteinsCatalaseInhA protein, MycobacteriumIsoniazidkatG protein, Mycobacterium tuberculosisOxidoreductasesisoniazid drug-resistancekatGMDR-TBnovel mutationPyrosequencingSanger sequencingtuberculosiswhole-genome sequencing

Identifiers

PMID26251830
PMCPMC4522615
OpenAlexW1496881415

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.