Evidence map›Paper›PMID 26251826›Full record

ArticleGenomics data2015

Gene expression profiling distinguishes proneural glioma stem cells from mesenchymal glioma stem cells.

Uma R Chandran, Soumya Luthra, Lucas Santana-Santos, Ping Mao, Sung-Hak Kim, Mutsuko Minata, Jianfeng Li, Panayiotis V Benos, Mao DeWang, Bo Hu and 3 more

Open access · goldAbstract read
In one paragraph

Article in Genomics data, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Bivalent Genes Targeting of Glioma Heterogeneity and Plasticity.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Review
  13. RNA modifications in brain tumorigenesis.Acta neuropathologica communications · 2020
    Review
  14. Article
  15. Glioblastoma Stem-Frontiers in oncology · 2019
    Review
  16. Article
  17. Review
  18. Review
  19. Review
  20. Efficacy of Onalespib, a Long-Acting Second-Generation HSP90 Inhibitor, as a Single Agent and in Combination with Temozolomide against Malignant Gliomas.Clinical cancer research : an official journal of the American Association for Cancer Research · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 2 countries.

Uma R ChandranDepartment of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.
Soumya LuthraDepartment of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.
Lucas Santana-SantosDepartment of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA ; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Ping MaoDepartment of Neurological Surgery, The Ohio State University, Columbus, OH 43210, USA ; Department of Neurosurgery, First Affiliated Hospital of Medical School, Xi'an Jiaotong University, Xi'an, Shaanxi, 710061, China.
Sung-Hak KimDepartment of Neurological Surgery, The Ohio State University, Columbus, OH 43210, USA.
Mutsuko MinataDepartment of Neurological Surgery, The Ohio State University, Columbus, OH 43210, USA.
Jianfeng LiDepartment of Pharmacology & Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15216, USA ; University of Pittsburgh Cancer Institute, Hillman Cancer Center, Pittsburgh, PA 15213-1863, USA ; University of South Alabama Mitchell Cancer Institute, Mobile, AL 36604, USA.
Panayiotis V BenosDepartment of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA ; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Mao DeWangDepartment of Neurosurgery, First Affiliated Hospital of Medical School, Xi'an Jiaotong University, Xi'an, Shaanxi, 710061, China.
Bo HuDepartment of Neurology & Northwestern Brain Tumor Institute, Center for Genetic Medicine, Robert Lurie Comprehensive Cancer Center, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Shi-Yuan ChengDepartment of Neurology & Northwestern Brain Tumor Institute, Center for Genetic Medicine, Robert Lurie Comprehensive Cancer Center, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Ichiro NakanoDepartment of Neurological Surgery, The Ohio State University, Columbus, OH 43210, USA ; James Comprehensive Cancer Center, The Ohio State University, Columbus, OH 43210, USA.
Robert W SobolDepartment of Pharmacology & Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15216, USA ; University of Pittsburgh Cancer Institute, Hillman Cancer Center, Pittsburgh, PA 15213-1863, USA ; Department of Human Genetics, University of Pittsburgh Graduate School of Public Health, Pittsburgh, PA 15216, USA ; University of South Alabama Mitchell Cancer Institute, Mobile, AL 36604, USA.
University of Pittsburgh · USNeurological Surgery · USNorthwestern University · USThe Ohio State University · USFirst Affiliated Hospital of Xi'an Jiaotong University · CNUniversity of South Alabama · USUPMC Hillman Cancer Center · US

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Jessie Nedrow · 1988 to 2026
$158.0M
Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
UNIVERSITY OF PITTSBURGH CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTE: BPCAUL1RR024153 · NCRR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2006 to 2011
$73.9M
Novel approaches to enhance tumor cell cytotoxicity of alkylating agentsR01CA148629 · NCI · UNIVERSITY OF SOUTH ALABAMA · PI SOBOL, ROBERT W · 2010 to 2021
$3.4M
DNA repair deficient cells for analysisR44GM087798 · NIGMS · TREVIGEN, INC. · PI GEORGE, JAY, SOBOL, ROBERT W · 2010 to 2011
$2.5M
Modeling in vivo Protein-DNA Interactions from High-Throughput Data MP1/1R01LM009657 · NLM · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BENOS, PANAGIOTIS V, KAMINSKI, NAFTALI · 2007 to 2011
$2.5M
Glioblastoma Phenotype Modulation Through miRNA Control of Wnt SignalingR01NS093843 · NINDS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHENG, SHI-YUAN · 2015 to 2019
$1.8M
Modulation of Oncogenic Signaling in GlioblastomasR01CA159811 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHENG, SHI-YUAN · 2012 to 2016
$1.8M
Autophagy Regulation of Glioblastoma Tumorigenesis and Responses to TherapyR01NS095634 · NINDS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHENG, SHI-YUAN · 2015 to 2019
$1.7M
ELMO1, Dock180 and Glioma InvasionR01CA130966 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHENG, SHI-YUAN · 2008 to 2012
$1.5M
Targeting MELK-mediated EZH2 signaling in glioma stem cellsR01NS083767 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LEE, JEONGWU, NAKANO, ICHIRO · 2013 to 2017
$1.3M
CometChip: Enabling Translation of DNA Damage and Repair AssaysR21ES019498 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ENGELWARD, BEVIN P., SOBOL, ROBERT W · 2011 to 2012
$434k
NCI NIH HHS P30 CA047904NCI NIH HHS P30 CA060553NCI NIH HHS R01 CA130966NCI NIH HHS R01 CA148629NCI NIH HHS R01 CA159811NCI NIH HHS R21 CA135013NCRR NIH HHS UL1 RR024153NIEHS NIH HHS R21 ES019498NIGMS NIH HHS R43 GM087798NIGMS NIH HHS R43 GM099213NIGMS NIH HHS R44 GM087798NINDS NIH HHS R01 NS083767NINDS NIH HHS R01 NS093843NINDS NIH HHS R01 NS095634NLM NIH HHS R01 LM009657
6 · The paper itself

Abstract

Tumor heterogeneity of high-grade glioma (HGG) is recognized by four clinically relevant subtypes based on core gene signatures. However, molecular signaling in glioma stem cells (GSCs) in individual HGG subtypes is poorly characterized. Previously we identified and characterized two mutually exclusive GSC subtypes with distinct activated signaling pathways and biological phenotypes. One GSC subtype presented with a gene signature resembling Proneural (PN) HGG, whereas the other was similar to Mesenchymal (Mes) HGG. Classical HGG-derived GSCs were sub-classified as either one of these two subtypes. Differential mRNA expression analysis of PN and Mes GSCs identified 5,796 differentially expressed genes, revealing a pronounced correlation with the corresponding PN or Mes HGGs. Mes GSCs displayed more aggressive phenotypes

Identifiers

PMID26251826
PMCPMC4523279
OpenAlexW902198931

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.