Evidence map›Paper›PMID 26251320›Full record

ArticleBMC genomics2015

Systems toxicology identifies mechanistic impacts of 2-amino-4,6-dinitrotoluene (2A-DNT) exposure in Northern Bobwhite.

Kurt A Gust, Bindu Nanduri, Arun Rawat, Mitchell S Wilbanks, Choo Yaw Ang, David R Johnson, Ken Pendarvis, Xianfeng Chen, Michael J Quinn, Mark S Johnson and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 2 countries.

Kurt A GustEnvironmental Laboratory, US Army Engineer Research and Development Center, EL-EP-P, 3909 Halls Ferry Rd, Vicksburg, MS, 39180, USA. kurt.a.gust@usace.army.mil.
Bindu NanduriInstitute for Digital Biology, Mississippi State University, Starkville, MS, 39762, USA. bnanduri@cvm.msstate.edu.
Arun RawatTranslational Genomics Research Institute, Phoenix, AZ, 85004, USA. rawat.arun@gmail.com.
Mitchell S WilbanksEnvironmental Laboratory, US Army Engineer Research and Development Center, EL-EP-P, 3909 Halls Ferry Rd, Vicksburg, MS, 39180, USA. mitchell.s.wilbanks@usace.army.mil.
Choo Yaw AngBadger Technical Services, San Antonio, TX, 71286, USA. chooyaw@hotmail.com.
David R JohnsonConestoga-Rovers & Associates, Dallas, TX, 75234, USA. drj0054@gmail.com.
Ken PendarvisUniversity of Arizona, School of Animal and Comparative Biomedical Sciences, Tucson, AZ, 85721, USA. jkpendarvis@email.arizona.edu.
Xianfeng ChenIFXworks LLC, 2915 Columbia Pike, Arlington, VA, 22204, USA. xianfeng.chen@ifxworks.com.
Michael J QuinnUS Army Public Health Command, Aberdeen Proving Ground, Aberdeen, MD, 21010, USA. michael.j.quinn104.civ@mail.mil.
Mark S JohnsonUS Army Public Health Command, Aberdeen Proving Ground, Aberdeen, MD, 21010, USA. mark.s.johnson.civ@mail.mil.
Shane C BurgessUniversity of Arizona, College of Agriculture and Life Sciences, Tucson, AZ, 85721, USA. dean@cals.arizona.edu.
Edward J PerkinsEnvironmental Laboratory, US Army Engineer Research and Development Center, EL-EP-P, 3909 Halls Ferry Rd, Vicksburg, MS, 39180, USA. edward.j.perkins@usace.army.mil.
U.S. Army Engineer Research and Development Center · USUnited States Army Medical Command · USUniversity of Arizona · USConestoga College · CAMississippi State University · USResearchWorks (United States) · USTargazyme (United States) · USTranslational Genomics Research Institute · US

Funding

Training and Mentoring Core P20GM103476 · NIGMS · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI MICHAEL R GARRETT · 2012 to 2026
$60.2M
Zinc dependent conformational changes in AdcR and their impact on DNA bindingP20GM103646 · NIGMS · MISSISSIPPI STATE UNIVERSITY · PI THIBAUDEAU, GISELLE · 2013 to 2022
$21.1M
NIGMS NIH HHS P20 GM103476NIGMS NIH HHS P20 GM103646
6 · The paper itself

Abstract

backgroundA systems toxicology investigation comparing and integrating transcriptomic and proteomic results was conducted to develop holistic effects characterizations for the wildlife bird model, Northern bobwhite (Colinus virginianus) dosed with the explosives degradation product 2-amino-4,6-dinitrotoluene (2A-DNT). A subchronic 60 d toxicology bioassay was leveraged where both sexes were dosed via daily gavage with 0, 3, 14, or 30 mg/kg-d 2A-DNT. Effects on global transcript expression were investigated in liver and kidney tissue using custom microarrays for C. virginianus in both sexes at all doses, while effects on proteome expression were investigated in liver for both sexes and kidney in males, at 30 mg/kg-d.

resultsAs expected, transcript expression was not directly indicative of protein expression in response to 2A-DNT. However, a high degree of correspondence was observed among gene and protein expression when investigating higher-order functional responses including statistically enriched gene networks and canonical pathways, especially when connected to toxicological outcomes of 2A-DNT exposure. Analysis of networks statistically enriched for both transcripts and proteins demonstrated common responses including inhibition of programmed cell death and arrest of cell cycle in liver tissues at 2A-DNT doses that caused liver necrosis and death in females. Additionally, both transcript and protein expression in liver tissue was indicative of induced phase I and II xenobiotic metabolism potentially as a mechanism to detoxify and excrete 2A-DNT. Nuclear signaling assays, transcript expression and protein expression each implicated peroxisome proliferator-activated receptor (PPAR) nuclear signaling as a primary molecular target in the 2A-DNT exposure with significant downstream enrichment of PPAR-regulated pathways including lipid metabolic pathways and gluconeogenesis suggesting impaired bioenergetic potential.

conclusionAlthough the differential expression of transcripts and proteins was largely unique, the consensus of functional pathways and gene networks enriched among transcriptomic and proteomic datasets provided the identification of many critical metabolic functions underlying 2A-DNT toxicity as well as impaired PPAR signaling, a key molecular initiating event known to be affected in di- and trinitrotoluene exposures.

Indexed as

Aniline CompoundsAnimalsBiological AssayColinusDose-Response Relationship, DrugExplosive AgentsFemaleKidneyLiverMaleMetabolic Networks and PathwaysProteomeProteomics2-amino-4,6-dinitrotolueneAniline CompoundsExplosive AgentsProteome

Identifiers

PMID26251320
PMCPMC4545821
OpenAlexW1844406987

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.