Evidence map›Paper›PMID 26249694›Full record

ArticleActa crystallographica. Section F, Structural biology communications2015

Overproduction, crystallization and X-ray diffraction data analysis of ectoine synthase from the cold-adapted marine bacterium Sphingopyxis alaskensis.

Stefanie Kobus, Nils Widderich, Astrid Hoeppner, Erhard Bremer, Sander H J Smits

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In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Stefanie KobusCrystal Farm and X-ray Facility, Heinrich-Heine-University, Universitaetsstrasse 1, 40225 Düsseldorf, Germany.
Nils WidderichDepartment of Biology, Laboratory for Microbiology, Philipps-University Marburg, Karl-von-Frisch Strasse 8, 35043 Marburg, Germany.
Astrid HoeppnerCrystal Farm and X-ray Facility, Heinrich-Heine-University, Universitaetsstrasse 1, 40225 Düsseldorf, Germany.
Erhard BremerDepartment of Biology, Laboratory for Microbiology, Philipps-University Marburg, Karl-von-Frisch Strasse 8, 35043 Marburg, Germany.
Sander H J SmitsInstitute of Biochemistry, Heinrich-Heine-University, Universitaetsstrasse 1, 40225 Düsseldorf, Germany.
Heinrich Heine University Düsseldorf · DEHelmholtz-Zentrum Berlin für Materialien und Energie · DELoewe Center for Synthetic Microbiology · DEPhilipps University of Marburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ectoine biosynthetic genes (ectABC) are widely distributed in bacteria. Microorganisms that carry them make copious amounts of ectoine as a cell protectant in response to high-osmolarity challenges. Ectoine synthase (EctC; EC 4.2.1.108) is the key enzyme for the production of this compatible solute and mediates the last step of ectoine biosynthesis. It catalyzes the ring closure of the cyclic ectoine molecule. A codon-optimized version of ectC from Sphingopyxis alaskensis (Sa) was used for overproduction of SaEctC protein carrying a Strep-tag II peptide at its carboxy-terminus. The recombinant SaEctC-Strep-tag II protein was purified to near-homogeneity from Escherichia coli cell extracts by affinity chromatography. Size-exclusion chromatography revealed that it is a dimer in solution. The SaEctC-Strep-tag II protein was crystallized using the sitting-drop vapour-diffusion method and crystals that diffracted to 1.0 Å resolution were obtained.

Indexed as

Adaptation, PhysiologicalAmino Acid SequenceAquatic OrganismsBacterial ProteinsCloning, MolecularCold TemperatureCrystallizationCrystallography, X-RayEscherichia coliGene ExpressionHydro-LyasesMolecular Sequence DataRecombinant Fusion ProteinsSequence AlignmentSphingomonadaceaeBacterial Proteinsectoine synthaseHydro-LyasesRecombinant Fusion Proteinschemical chaperonecompatible solutecupinectoine synthesisenzymeosmostress protectantX-ray analysis

Identifiers

PMID26249694
PMCPMC4528936
OpenAlexW2292816492

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.