Evidence map›Paper›PMID 26249684›Full record

ArticleActa crystallographica. Section F, Structural biology communications2015

Purification and crystallographic analysis of a FAD-dependent halogenase from Streptomyces sp. JCM9888.

Yanqun Zhao, Baohua Yan, Ting Yang, Jian Jiang, Heng Wei, Xiaofeng Zhu

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yanqun ZhaoCollege of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of the Ministry of Education, Center for Growth, Metabolism and Aging, Sichuan University, Chengdu 610064, People's Republic of China.
Baohua YanCollege of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of the Ministry of Education, Center for Growth, Metabolism and Aging, Sichuan University, Chengdu 610064, People's Republic of China.
Ting YangCollege of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of the Ministry of Education, Center for Growth, Metabolism and Aging, Sichuan University, Chengdu 610064, People's Republic of China.
Jian JiangCollege of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of the Ministry of Education, Center for Growth, Metabolism and Aging, Sichuan University, Chengdu 610064, People's Republic of China.
Heng WeiCollege of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of the Ministry of Education, Center for Growth, Metabolism and Aging, Sichuan University, Chengdu 610064, People's Republic of China.
Xiaofeng ZhuCollege of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of the Ministry of Education, Center for Growth, Metabolism and Aging, Sichuan University, Chengdu 610064, People's Republic of China.
Sichuan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A new FAD (flavin adenine dinucleotide)-dependent halogenase HalY from Streptomyces sp. JCM9888 was reported to be involved in the regioselective halogenation of adenine. HalY is a variant B FAD-dependent halogenase that is most similar to the halogenase PltA involved in pyoluteorin biosynthesis. This study reports the overexpression and purification of HalY with an N-terminal hexahistidine tag, followed by crystallization experiments and X-ray crystallographic analysis. HalY was purified as a monomer in solution and crystallized to give X-ray diffraction to a resolution of 1.7 Å. The crystal belonged to the monoclinic space group P21, with unit-cell parameters a = 41.4, b = 113.4, c = 47.6 Å, α = γ = 90, β = 107.4°, and contained one monomer of HalY in the asymmetric unit, with a calculated Matthews coefficient of 2.3 Å(3) Da(-1) and a solvent content of 46%. The structure of the halogenase CndH was used as a search model in molecular replacement to obtain the initial model of HalY. Manual model building and structure refinement of HalY are in progress.

Indexed as

AdenineAmino Acid SequenceBacterial ProteinsCloning, MolecularCrystallizationCrystallography, X-RayEscherichia coliFlavin-Adenine DinucleotideGene ExpressionMolecular Sequence DataOxidoreductasesRecombinant Fusion ProteinsSequence AlignmentSequence Homology, Amino AcidStreptomycesAdenineBacterial ProteinsFlavin-Adenine DinucleotideOxidoreductasesRecombinant Fusion ProteinsadenineFAD-dependent halogenaseregioselective halogenation

Identifiers

PMID26249684
PMCPMC4528926
OpenAlexW1051972479

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.