Evidence map›Paper›PMID 26249682›Full record

ArticleActa crystallographica. Section F, Structural biology communications2015

Molecular cloning, overexpression, purification and crystallographic analysis of a GH43 β-xylosidase from Bacillus licheniformis.

José Alberto Diogo, Leticia Maria Zanphorlin, Hélia Harumi Sato, Mario Tyago Murakami, Roberto Ruller

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

José Alberto DiogoBrazilian Bioethanol Science and Technology Laboratory (CTBE), National Center for Research in Energy and Materials (CNPEM), Giuseppe Maximo Scolfaro 10000, 13083-100 Campinas-SP, Brazil.
Leticia Maria ZanphorlinBrazilian Bioethanol Science and Technology Laboratory (CTBE), National Center for Research in Energy and Materials (CNPEM), Giuseppe Maximo Scolfaro 10000, 13083-100 Campinas-SP, Brazil.
Hélia Harumi SatoDepartment of Food Science, University of Campinas, Rua Monteiro Lobato 80, Cidade Universitária, 13081-970 Campinas-SP, Brazil.
Mario Tyago MurakamiBrazilian Biosciences National Laboratory (LNBio), National Center for Research in Energy and Materials (CNPEM), Giuseppe Maximo Scolfaro 10000, 13083-100 Campinas-SP, Brazil.
Roberto RullerBrazilian Bioethanol Science and Technology Laboratory (CTBE), National Center for Research in Energy and Materials (CNPEM), Giuseppe Maximo Scolfaro 10000, 13083-100 Campinas-SP, Brazil.
Brazilian Biosciences National Laboratory · BRBrazilian Center for Research in Energy and Materials · BRUniversidade Estadual de Campinas (UNICAMP) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

β-Xylosidases (EC 3.2.1.37) catalyze the hydrolysis of short xylooligosaccharides into xylose, which is an essential step in the complete depolymerization of xylan, the major hemicellulosic polysaccharide of plant cell walls, and has great biotechnological relevance for the production of lignocellulose-based biofuels and the paper industry. In this study, a GH43 β-xylosidase identified from the bacterium Bacillus licheniformis (BlXylA) was cloned into the the pET-28a bacterial expression vector, recombinantly overexpressed in Escherichia coli BL21(DE3) cells and purified to homogeneity by metal-affinity and size-exclusion chromatography. The protein was crystallized in the presence of the organic solvent 2-methyl-2,4-pentanediol and a single crystal diffracted to 2.49 Å resolution. The X-ray diffraction data were indexed in the monoclinic space group C2, with unit-cell parameters a = 152.82, b = 41.9, c = 71.79 Å, β = 91.7°. Structural characterization of this enzyme will contribute to a better understanding of the structural requirements for xylooligosaccharide specificity within the GH43 family.

Indexed as

Amino Acid SequenceBacillusBacterial ProteinsCloning, MolecularCrystallizationCrystallography, X-RayEscherichia coliGene ExpressionGlycolsMolecular Sequence DataRecombinant Fusion ProteinsSequence AlignmentSolventsXylosidasesBacterial Proteinsexo-1,4-beta-D-xylosidaseGlycolshexylene glycolRecombinant Fusion ProteinsSolventsXylosidasesBacillus licheniformisGH43 familyβ-xylosidase

Identifiers

PMID26249682
PMCPMC4528924
OpenAlexW1086480584

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.