Evidence map›Paper›PMID 26248384›Full record

ArticleAntimicrobial agents and chemotherapy2015

Detection of a New cfr-Like Gene, cfr(B), in Enterococcus faecium Isolates Recovered from Human Specimens in the United States as Part of the SENTRY Antimicrobial Surveillance Program.

Lalitagauri M Deshpande, Deborah S Ashcraft, Heather P Kahn, George Pankey, Ronald N Jones, David J Farrell, Rodrigo E Mendes

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 159 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Antimicrobial agents and chemotherapy · 2025
    Article
  6. Article
  7. Linezolid in the Focus of Antimicrobial Resistance ofInternational journal of molecular sciences · 2025
    Review
  8. Molecular Characterization of Linezolid-Non-SusceptibleInfection and drug resistance · 2025
    Article
  9. Article
  10. Non-Clinical microbiology reviews · 2024
    Review
  11. Article
  12. Article
  13. Risk exploration and prediction model construction for linezolid-resistant Enterococcus faecalis based on big data in a province in southern China.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
  14. Colocalization of Linezolid Resistance (Antimicrobial agents and chemotherapy · 2023
    Article
  15. Article
  16. Ribosome-targeting antibiotics and resistanceRSC medicinal chemistry · 2023
    Review
  17. Article
  18. Article
  19. Detection of Genes Related to Linezolid Resistance (Advanced biomedical research · 2023
    Article
  20. Genomic characterization of vancomycin-resistantFrontiers in microbiology · 2023
    Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Lalitagauri M DeshpandeJMI Laboratories, North Liberty, Iowa, USA.
Deborah S AshcraftOchsner Clinic Foundation, New Orleans, Louisiana, USA.
Heather P KahnOchsner Clinic Foundation, New Orleans, Louisiana, USA.
George PankeyOchsner Clinic Foundation, New Orleans, Louisiana, USA.
Ronald N JonesJMI Laboratories, North Liberty, Iowa, USA.
David J FarrellJMI Laboratories, North Liberty, Iowa, USA.
Rodrigo E MendesJMI Laboratories, North Liberty, Iowa, USA rodrigo-mendes@jmilabs.com.
JMI Laboratories · USOchsner Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two linezolid-resistant Enterococcus faecium isolates (MICs, 8 μg/ml) from unique patients of a medical center in New Orleans were included in this study. Isolates were initially investigated for the presence of mutations in the V domain of 23S rRNA genes and L3, L4, and L22 ribosomal proteins, as well as cfr. Isolates were subjected to pulsed-field gel electrophoresis (just one band difference), and one representative strain was submitted to whole-genome sequencing. Gene location was also determined by hybridization, and cfr genes were cloned and expressed in a Staphylococcus aureus background. The two isolates had one out of six 23S rRNA alleles mutated (G2576T), had wild-type L3, L4, and L22 sequences, and were positive for a cfr-like gene. The sequence of the protein encoded by the cfr-like gene was most similar (99.7%) to that found in Peptoclostridium difficile, which shared only 74.9% amino acid identity with the proteins encoded by genes previously identified in staphylococci and non-faecium enterococci and was, therefore, denominated Cfr(B). When expressed in S. aureus, the protein conferred a resistance profile similar to that of Cfr. Two copies of cfr(B) were chromosomally located and embedded in a Tn6218 similar to the cfr-carrying transposon described in P. difficile. This study reports the first detection of cfr genes in E. faecium clinical isolates in the United States and characterization of a new cfr variant, cfr(B). cfr(B) has been observed in mobile genetic elements in E. faecium and P. difficile, suggesting potential for dissemination. However, further analysis is necessary to access the resistance levels conferred by cfr(B) when expressed in enterococci.

Indexed as

AllelesAnti-Bacterial AgentsBacterial Proteinsbeta-LactamsChromosomes, BacterialCloning, MolecularDNA Transposable ElementsDrug Resistance, Multiple, BacterialEnterococcus faeciumEpidemiological MonitoringGene DosageGene ExpressionGram-Positive Bacterial InfectionsHumansMaleMiddle AgedAnti-Bacterial AgentsBacterial Proteinsbeta-LactamsDNA Transposable ElementsOxazolidinonesRecombinant ProteinsRibosomal ProteinsRNA, Ribosomal, 23S

Identifiers

PMID26248384
PMCPMC4576063
OpenAlexW2105047060

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.