Evidence map›Paper›PMID 26247774›Full record

ArticlePloS one2015

Quantitative Trait Loci for Salinity Tolerance Identified under Drained and Waterlogged Conditions and Their Association with Flowering Time in Barley (Hordeum vulgare. L).

Yanling Ma, Sergey Shabala, Chengdao Li, Chunji Liu, Wenying Zhang, Meixue Zhou

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
7.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. HvNCX, a prime candidate gene for the novel qualitative locus qS7.1 associated with salinity tolerance in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
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  7. Transcriptomic Analysis of the Interaction BetweenFrontiers in cell and developmental biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Yanling MaTasmanian Institute of Agriculture and School of Land and Food, University of Tasmania, P.O. Box 46, Kings Meadows, TAS, 7249, Australia.
Sergey ShabalaTasmanian Institute of Agriculture and School of Land and Food, University of Tasmania, P.O. Box 46, Kings Meadows, TAS, 7249, Australia.
Chengdao LiWestern Barley Genetics Alliance, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia.
Chunji LiuCSIRO Plant Industry, 306 Carmody Road, St. Lucia, QLD, 4067, Australia.
Wenying ZhangSchool of Agriculture, Yangtze University, Jingzhou, 434025, P.R. China.
Meixue ZhouSchool of Agriculture, Yangtze University, Jingzhou, 434025, P.R. China; Tasmanian Institute of Agriculture and School of Land and Food, University of Tasmania, P.O. Box 46, Kings Meadows, TAS, 7249, Australia.
University of Tasmania · AUYangtze University · CNMurdoch University · AUPlant Industry · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionSalinity is one of the major abiotic stresses affecting crop production via adverse effects of osmotic stress, specific ion toxicity, and stress-related nutritional disorders. Detrimental effects of salinity are also often exacerbated by low oxygen availability when plants are grown under waterlogged conditions. Developing salinity-tolerant varieties is critical to overcome these problems, and molecular marker assisted selection can make breeding programs more effective.

methodsIn this study, a double haploid (DH) population consisting of 175 lines, derived from a cross between a Chinese barley variety Yangsimai 1 (YSM1) and an Australian malting barley variety Gairdner, was used to construct a high density molecular map which contained more than 8,000 Diversity Arrays Technology (DArT) markers and single nucleotide polymorphism (SNP) markers. Salinity tolerance of parental and DH lines was evaluated under drained (SalinityD) and waterlogged (SalinityW) conditions at two different sowing times.

resultsThree quantitative trait loci (QTL) located on chromosome 1H, single QTL located on chromosomes 1H, 2H, 4H, 5H and 7H, were identified to be responsible for salinity tolerance under different environments. Waterlogging stress, daylight length and temperature showed significant effects on barley salinity tolerance. The QTL for salinity tolerance mapped on chromosomes 4H and 7H, QSlwd.YG.4H, QSlwd.YG.7H and QSlww.YG.7H were only identified in winter trials, while the QTL on chromosome 2H QSlsd.YG.2H and QSlsw.YG.2H were only detected in summer trials. Genes associated with flowering time were found to pose significant effects on the salinity QTL mapped on chromosomes 2H and 5H in summer trials. Given the fact that the QTL for salinity tolerance QSlsd.YG.1H and QSlww.YG.1H-1 reported here have never been considered in the literature, this warrants further investigation and evaluation for suitability to be used in breeding programs.

Indexed as

Quantitative Trait LociChromosome MappingChromosomes, PlantFlowersHaploidyHordeumPlant LeavesPotassiumSalinitySalt ToleranceSeasonsSodiumStress, PhysiologicalPotassiumSodium

Identifiers

PMID26247774
PMCPMC4527667
OpenAlexW1901352559

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.