Evidence map›Paper›PMID 26247737›Full record

ArticleCell death & disease2015

Assessment of p53 and ATM functionality in chronic lymphocytic leukemia by multiplex ligation-dependent probe amplification.

G D te Raa, P D Moerland, A C Leeksma, I A Derks, H Yigittop, N Laddach, M Loden-van Straaten, V Navrkalova, M Trbusek, D M Luijks and 7 more

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 4 countries.

G D te Raa1] Department of Hematology, Academic Medical Center, Amsterdam, The Netherlands [2] Laboratory of Experimental Immunology, Academic Medical Center, Amsterdam, The Netherlands.
P D MoerlandBioinformatics Laboratory, Department of Clinical Epidemiology, Biostatistics and Bioinformatics, Academic Medical Center, Amsterdam, The Netherlands.
A C Leeksma1] Department of Hematology, Academic Medical Center, Amsterdam, The Netherlands [2] Laboratory of Experimental Immunology, Academic Medical Center, Amsterdam, The Netherlands.
I A DerksLaboratory of Experimental Immunology, Academic Medical Center, Amsterdam, The Netherlands.
H YigittopMRC-Holland, Amsterdam, The Netherlands.
N LaddachMRC-Holland, Amsterdam, The Netherlands.
M Loden-van StraatenMRC-Holland, Amsterdam, The Netherlands.
V NavrkalovaDepartment of Molecular Medicine, Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
M TrbusekDepartment of Molecular Medicine, Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
D M Luijks1] Department of Hematology, Academic Medical Center, Amsterdam, The Netherlands [2] Laboratory of Experimental Immunology, Academic Medical Center, Amsterdam, The Netherlands.
T ZenzDepartment of Translational Oncology, National Center for Tumor Diseases (NCT), German Cancer Research Center (DKFZ) and Department of Medicine V, University Hospital Heidelberg, Heidelberg, Germany.
A SkowronskaSchool of Cancer Sciences, University of Birmingham, Birmingham, UK.
M HoogendoornDepartment of Hematology, Medical Center Leeuwarden, Leeuwarden, The Netherlands.
T StankovicSchool of Cancer Sciences, University of Birmingham, Birmingham, UK.
M H van Oers1] Department of Hematology, Academic Medical Center, Amsterdam, The Netherlands [2] LYMMCARE (Lymphoma and Myeloma Center), Amsterdam, The Netherlands.
E Eldering1] Laboratory of Experimental Immunology, Academic Medical Center, Amsterdam, The Netherlands [2] LYMMCARE (Lymphoma and Myeloma Center), Amsterdam, The Netherlands.
A P Kater1] Department of Hematology, Academic Medical Center, Amsterdam, The Netherlands [2] Laboratory of Experimental Immunology, Academic Medical Center, Amsterdam, The Netherlands [3] LYMMCARE (Lymphoma and Myeloma Center), Amsterdam, The Netherlands.
Academic Medical Center · NLMRC Holland (Netherlands) · NLUniversity of Birmingham · GBCentral European Institute of Technology · CZCentral European Institute of Technology – Masaryk University · CZMedisch Centrum Leeuwarden · NLNational Center for Tumor Diseases · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ATM-p53 DNA-damage response (DDR) pathway has a crucial role in chemoresistance in CLL, as indicated by the adverse prognostic impact of genetic aberrations of TP53 and ATM. Identifying and distinguishing TP53 and ATM functional defects has become relevant as epigenetic and posttranscriptional dysregulation of the ATM/p53 axis is increasingly being recognized as the underlying cause of chemoresistance. Also, specific treatments sensitizing TP53- or ATM-deficient CLL cells are emerging. We therefore developed a new ATM-p53 functional assay with the aim to (i) identify and (ii) distinguish abnormalities of TP53 versus ATM and (iii) enable the identification of additional defects in the ATM-p53 pathway. Reversed transcriptase multiplex ligation-dependent probe amplification (RT-MLPA) was used to measure ATM and/or p53-dependent genes at the RNA level following DNA damage using irradiation. Here, we showed that this assay is able to identify and distinguish three subgroups of CLL tumors (i.e., TP53-defective, ATM-defective and WT) and is also able to detect additional samples with a defective DDR, without molecular aberrations in TP53 and/or ATM. These findings make the ATM-p53 RT-MLPA functional assay a promising prognostic tool for predicting treatment responses in CLL.

Indexed as

Gene Expression Regulation, LeukemicMutationAntineoplastic AgentsAtaxia Telangiectasia Mutated ProteinsBiological AssayDNA DamageDoxorubicinDrug Resistance, NeoplasmEpigenesis, GeneticGamma RaysHumansLeukemia, Lymphocytic, Chronic, B-CellMultiplex Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA, NeoplasmSensitivity and SpecificityAntineoplastic AgentsAtaxia Telangiectasia Mutated ProteinsATM protein, humanDoxorubicinfludarabineRNA, NeoplasmTumor Suppressor Protein p53Vidarabine

Identifiers

PMID26247737
PMCPMC4558513
OpenAlexW1905032999

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.