Evidence map›Paper›PMID 26247046›Full record

ArticleMolecular genetics & genomic medicine2015

Novel pathogenic variants and genes for myopathies identified by whole exome sequencing.

Jesse M Hunter, Mary Ellen Ahearn, Christopher D Balak, Winnie S Liang, Ahmet Kurdoglu, Jason J Corneveaux, Megan Russell, Matthew J Huentelman, David W Craig, John Carpten and 5 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 3 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 3 syntheses or guidelines pooled it, 46 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
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  15. Core myopathies - a short review.Acta myologica : myopathies and cardiomyopathies : official journal of the Mediterranean Society of Myology · 2020
    Review
  16. Skeletal muscle CaPflugers Archiv : European journal of physiology · 2020
    Review
  17. Article
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  19. Collagen VI in healthy and diseased nervous system.Disease models & mechanisms · 2018
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Jesse M HunterIntegrated Cancer Genomics, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
Mary Ellen AhearnIntegrated Cancer Genomics, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
Christopher D BalakIntegrated Cancer Genomics, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
Winnie S LiangCollaborative Sequencing Center, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
Ahmet KurdogluCenter for Bioinformatics, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
Jason J CorneveauxNeurogenomics, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
Megan RussellCenter for Bioinformatics, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
Matthew J HuentelmanNeurogenomics, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
David W CraigNeurogenomics, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
John CarptenIntegrated Cancer Genomics, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
Stephen W CoonsSection of Neuropathology, Barrow Neurological Institute Phoenix, Arizona.
Daphne E DeMelloDivision of Neurology, Phoenix Children's Hospital Phoenix, Arizona.
Judith G HallDepartments of Medical Genetics and Pediatrics, University of British Columbia Vancouver, British Columbia, Canada.
Saunder M BernesDivision of Neurology, Phoenix Children's Hospital Phoenix, Arizona.
Lisa Baumbach-ReardonIntegrated Cancer Genomics, Translational Genomics Research Institute (TGen) Phoenix, Arizona.
Translational Genomics Research Institute · USPhoenix Children's Hospital · USBarrow Neurological Institute · USUniversity of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neuromuscular diseases (NMD) account for a significant proportion of infant and childhood mortality and devastating chronic disease. Determining the specific diagnosis of NMD is challenging due to thousands of unique or rare genetic variants that result in overlapping phenotypes. We present four unique childhood myopathy cases characterized by relatively mild muscle weakness, slowly progressing course, mildly elevated creatine phosphokinase (CPK), and contractures. We also present two additional cases characterized by severe prenatal/neonatal myopathy. Prior extensive genetic testing and histology of these cases did not reveal the genetic etiology of disease. Here, we applied whole exome sequencing (WES) and bioinformatics to identify likely causal pathogenic variants in each pedigree. In two cases, we identified novel pathogenic variants in COL6A3. In a third case, we identified novel likely pathogenic variants in COL6A6 and COL6A3. We identified a novel splice variant in EMD in a fourth case. Finally, we classify two cases as calcium channelopathies with identification of novel pathogenic variants in RYR1 and CACNA1S. These are the first cases of myopathies reported to be caused by variants in COL6A6 and CACNA1S. Our results demonstrate the utility and genetic diagnostic value of WES in the broad class of NMD phenotypes.

Indexed as

ArthrogryposisCACNA1Scentral core diseaseCOL6A3COL6A6EMDexomemuscular dystrophymyopathyRYR1

Identifiers

PMID26247046
PMCPMC4521965
OpenAlexW2147935385

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.