Evidence map›Paper›PMID 26246652›Full record

ArticleJournal of applied statistics

A Bayesian hierarchical model for inference across related reverse phase protein arrays experiments.

Riten Mitra, Peter Müller, Yuan Ji, Yitan Zhu, Gordon Mills, Yiling Lu

Abstract read
In one paragraph

Article in Journal of applied statistics. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 92% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Riten MitraICES, University of Texas at Austin, Austin, TX, USA.
Peter MüllerDepartment of Mathematics, University of Texas at Austin, Austin, USA.
Yuan JiCCRI, Northshore University HealthSystem, Chicago, IL, USA.
Yitan ZhuCCRI, Northshore University HealthSystem, Chicago, IL, USA.
Gordon MillsDepartment of Systems Biology, UT MD Anderson Cancer Centre, Houston, TX, USA.
Yiling LuDepartment of Systems Biology, UT MD Anderson Cancer Centre, Houston, TX, USA.
NorthShore University HealthSystem · USThe University of Texas at Austin · USThe University of Texas MD Anderson Cancer Center · US

Funding

Bayesian models for cancer prognosis by integrating diverse types of dataR01CA132897 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI JI, YUAN, MUELLER, PETER · 2008 to 2019
$2.1M
NCI NIH HHS R01 CA132897
6 · The paper itself

Abstract

We consider inference for functional proteomics experiments that record protein activation over time following perturbation under different dose levels of several drugs. The main inference goal is the dependence structure of the selected proteins. A critical challenge is the lack of sufficient data under any one drug and dose level to allow meaningful inference on dependence structure. We propose a hierarchical model to implement the desired inference. The key element of the model is a shared dependence structure on (latent) binary indicators of protein activation.

Indexed as

Bayesiangraphicalhierarchical modelprotein networkstimecourse

Identifiers

PMID26246652
PMCPMC4523276
OpenAlexW2029637089

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.