Evidence map›Paper›PMID 26246573›Full record

ArticleJournal of virology2015

Hydrodynamic and Membrane Binding Properties of Purified Rous Sarcoma Virus Gag Protein.

Robert A Dick, Siddhartha A K Datta, Hirsh Nanda, Xianyang Fang, Yi Wen, Marilia Barros, Yun-Xing Wang, Alan Rein, Volker M Vogt

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Robert A DickDepartment of MolecularBiology and Genetics, Cornell University, Ithaca, New York, USA rad82@cornell.edu dattasi@mail.nih.gov.
Siddhartha A K DattaHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA rad82@cornell.edu dattasi@mail.nih.gov.
Hirsh NandaNIST Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, Maryland, USA Department of Physics, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
Xianyang FangProtein-Nucleic Acid Interaction Section, Structural Biophysics Laboratory, National Cancer Institute, National Institutes of Health, Frederick, Maryland, USA.
Yi WenDepartment of MolecularBiology and Genetics, Cornell University, Ithaca, New York, USA.
Marilia BarrosDepartment of Physics, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
Yun-Xing WangProtein-Nucleic Acid Interaction Section, Structural Biophysics Laboratory, National Cancer Institute, National Institutes of Health, Frederick, Maryland, USA.
Alan ReinHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Volker M VogtDepartment of MolecularBiology and Genetics, Cornell University, Ithaca, New York, USA.
Cornell University · USNational Cancer Institute · USCarnegie Mellon University · USCenter for Cancer Research · USNIST Center for Neutron Research · US

Funding

Retrovirus Assembly and MaturationZIABC010511 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI REIN, ALAN · 2009 to 2025
$9.4M
Structure and Assembly of RetrovirusesR01GM107013 · NIGMS · CORNELL UNIVERSITY · PI VOGT, VOLKER M. · 2013 to 2018
$1.5M
Membrane Coupling and Dynamic Reorganization of Gag in Viral BuddingR01GM101647 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI LOESCHE, MATHIAS · 2012 to 2015
$1.2M
Intramural NIH HHSNIGMS NIH HHS R01 GM101647NIGMS NIH HHS R01GM101647NIGMS NIH HHS R01 GM107013NIGMS NIH HHS R01GM107013
6 · The paper itself

Abstract

unlabelledPreviously, no retroviral Gag protein has been highly purified in milligram quantities and in a biologically relevant and active form. We have purified Rous sarcoma virus (RSV) Gag protein and in parallel several truncation mutants of Gag and have studied their biophysical properties and membrane interactions in vitro. RSV Gag is unusual in that it is not naturally myristoylated. From its ability to assemble into virus-like particles in vitro, we infer that RSV Gag is biologically active. By size exclusion chromatography and small-angle X-ray scattering, Gag in solution appears extended and flexible, in contrast to previous reports on unmyristoylated HIV-1 Gag, which is compact. However, by neutron reflectometry measurements of RSV Gag bound to a supported bilayer, the protein appears to adopt a more compact, folded-over conformation. At physiological ionic strength, purified Gag binds strongly to liposomes containing acidic lipids. This interaction is stimulated by physiological levels of phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] and by cholesterol. However, unlike HIV-1 Gag, RSV Gag shows no sensitivity to acyl chain saturation. In contrast with full-length RSV Gag, the purified MA domain of Gag binds to liposomes only weakly. Similarly, both an N-terminally truncated version of Gag that is missing the MA domain and a C-terminally truncated version that is missing the NC domain bind only weakly. These results imply that NC contributes to membrane interaction in vitro, either by directly contacting acidic lipids or by promoting Gag multimerization. IMPORTANCE: Retroviruses like HIV assemble at and bud from the plasma membrane of cells. Assembly requires the interaction between thousands of Gag molecules to form a lattice. Previous work indicated that lattice formation at the plasma membrane is influenced by the conformation of monomeric HIV. We have extended this work to the more tractable RSV Gag. Our results show that RSV Gag is highly flexible and can adopt a folded-over conformation on a lipid bilayer, implicating both the N and C termini in membrane binding. In addition, binding of Gag to membranes is diminished when either terminal domain is truncated. RSV Gag membrane association is significantly less sensitive than HIV Gag membrane association to lipid acyl chain saturation. These findings shed light on Gag assembly and membrane binding, critical steps in the viral life cycle and an untapped target for antiretroviral drugs.

Indexed as

Cell MembraneCholesterolEscherichia coliGene ExpressionGene Products, gagHIV-1HydrodynamicsLipid BilayersOsmolar ConcentrationPhosphatidylcholinesPhosphatidylethanolaminesPhosphatidylinositol 4,5-DiphosphateProtein BindingProtein FoldingProtein Structure, SecondaryProtein Structure, Tertiary1,2-oleoylphosphatidylcholine1-palmitoyl-2-oleoylphosphatidylcholine1-palmitoyl-2-oleoylphosphatidylethanolamineCholesterolGene Products, gagLipid BilayersPhosphatidylcholinesPhosphatidylethanolaminesPhosphatidylinositol 4,5-DiphosphateRecombinant Proteins

Identifiers

PMID26246573
PMCPMC4580166
OpenAlexW1950488331

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.