Evidence map›Paper›PMID 26246495›Full record

ArticleOpen biology2015

Dissecting the function of Atg1 complex in Dictyostelium autophagy reveals a connection with the pentose phosphate pathway enzyme transketolase.

Ana Mesquita, Luis C Tábara, Oscar Martinez-Costa, Natalia Santos-Rodrigo, Olivier Vincent, Ricardo Escalante

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Methods to Assess Autophagic Activity in Dictyostelium.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  3. Article
  4. Article
  5. TheFrontiers in cell and developmental biology · 2021
    Review
  6. Calmodulin-mediated events during the life cycle of the amoebozoan Dictyostelium discoideum.Biological reviews of the Cambridge Philosophical Society · 2020
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 3 countries.

Ana MesquitaInstituto de Investigaciones Biomédicas Alberto Sols, CSIC/UAM, Madrid, Spain.
Luis C TábaraInstituto de Investigaciones Biomédicas Alberto Sols, CSIC/UAM, Madrid, Spain.
Oscar Martinez-CostaInstituto de Investigaciones Biomédicas Alberto Sols, CSIC/UAM, Madrid, Spain.ORCID http://orcid.org/0000-0003-4893-2205
Natalia Santos-RodrigoInstituto de Investigaciones Biomédicas Alberto Sols, CSIC/UAM, Madrid, Spain.
Olivier VincentInstituto de Investigaciones Biomédicas Alberto Sols, CSIC/UAM, Madrid, Spain.ORCID http://orcid.org/0000-0003-4355-5367
Ricardo EscalanteInstituto de Investigaciones Biomédicas Alberto Sols, CSIC/UAM, Madrid, Spain rescalante@iib.uam.es.ORCID http://orcid.org/0000-0001-8547-531X
Google (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The network of protein-protein interactions of the Dictyostelium discoideum autophagy pathway was investigated by yeast two-hybrid screening of the conserved autophagic proteins Atg1 and Atg8. These analyses confirmed expected interactions described in other organisms and also identified novel interactors that highlight the complexity of autophagy regulation. The Atg1 kinase complex, an essential regulator of autophagy, was investigated in detail here. The composition of the Atg1 complex in D. discoideum is more similar to mammalian cells than to Saccharomyces cerevisiae as, besides Atg13, it contains Atg101, a protein not conserved in this yeast. We found that Atg101 interacts with Atg13 and genetic disruption of these proteins in Dictyostelium leads to an early block in autophagy, although the severity of the developmental phenotype and the degree of autophagic block is higher in Atg13-deficient cells. We have also identified a protein containing zinc-finger B-box and FNIP motifs that interacts with Atg101. Disruption of this protein increases autophagic flux, suggesting that it functions as a negative regulator of Atg101. We also describe the interaction of Atg1 kinase with the pentose phosphate pathway enzyme transketolase (TKT). We found changes in the activity of endogenous TKT activity in strains lacking or overexpressing Atg1, suggesting the presence of an unsuspected regulatory pathway between autophagy and the pentose phosphate pathway in Dictyostelium that seems to be conserved in mammalian cells.

Indexed as

AutophagyPentose Phosphate PathwayBiomarkersCarrier ProteinsDictyosteliumEnzyme ActivationGenes, ReporterIntracellular SpaceMutationProtein BindingProtein Interaction MappingProtein Serine-Threonine KinasesProtein SubunitsProtein TransportReproducibility of ResultsTransketolaseBiomarkersCarrier ProteinsProtein Serine-Threonine KinasesProtein SubunitsTransketolaseUbiquitinAtg101Atg1 complexAtg8autophagyDictyosteliumtransketolase

Identifiers

PMID26246495
PMCPMC4554924
OpenAlexW2173473500

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.