Evidence map›Paper›PMID 26246416›Full record

ArticleJournal of the Royal Society, Interface2015

Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation.

Shashi Thutupalli, Mingzhai Sun, Filiz Bunyak, Kannappan Palaniappan, Joshua W Shaevitz

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Deep learning framework for quantifying self-organization inProceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Ensemble Deep Learning Object Detection Fusion for Cell Tracking, Mitosis, and Lineage.IEEE open journal of engineering in medicine and biology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Cell density, alignment, and orientation correlate with C-signal-dependent gene expression duringProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Article
  15. Mechanotaxis directsProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Pattern formation and polarity sorting of driven actin filaments on lipid membranes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Review
  18. Article
  19. Development of semi-automatic procedure for detection and tracking of fiducial markers for orofacial kinematics during natural feeding.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference · 2017
    Article
  20. Data-driven modeling reveals cell behaviors controlling self-organization duringProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shashi ThutupalliJoseph Henry Laboratories of Physics, Princeton University, Princeton, NJ 08544, USA Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA Department of Mechanical and Aerospace Engineering, Princeton University, Princeton, NJ 08544, USA.
Mingzhai SunLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Filiz BunyakDepartment of Computer Science, University of Missouri, Columbia, MO 65211, USA.
Kannappan PalaniappanDepartment of Computer Science, University of Missouri, Columbia, MO 65211, USA.
Joshua W ShaevitzJoseph Henry Laboratories of Physics, Princeton University, Princeton, NJ 08544, USA Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA shaevitz@princeton.edu.

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
Quantifying deformable motion in growth and motilityR33EB000573 · NIBIB · UNIVERSITY OF MISSOURI-COLUMBIA · PI PALANIAPPAN, K. · 2003 to 2005
$605k
NIBIB NIH HHS R33 EB000573NIBIB NIH HHS R33-EB00573NIGMS NIH HHS P50 GM071508NIGMS NIH HHS P50GM071508
6 · The paper itself

Abstract

The formation of a collectively moving group benefits individuals within a population in a variety of ways. The surface-dwelling bacterium Myxococcus xanthus forms dynamic collective groups both to feed on prey and to aggregate during times of starvation. The latter behaviour, termed fruiting-body formation, involves a complex, coordinated series of density changes that ultimately lead to three-dimensional aggregates comprising hundreds of thousands of cells and spores. How a loose, two-dimensional sheet of motile cells produces a fixed aggregate has remained a mystery as current models of aggregation are either inconsistent with experimental data or ultimately predict unstable structures that do not remain fixed in space. Here, we use high-resolution microscopy and computer vision software to spatio-temporally track the motion of thousands of individuals during the initial stages of fruiting-body formation. We find that cells undergo a phase transition from exploratory flocking, in which unstable cell groups move rapidly and coherently over long distances, to a reversal-mediated localization into one-dimensional growing streams that are inherently stable in space. These observations identify a new phase of active collective behaviour and answer a long-standing open question in Myxococcus development by describing how motile cell groups can remain statistically fixed in a spatial location.

Indexed as

Models, BiologicalMyxococcus xanthuscell trackingcollective behaviourfruiting-body formationMyxococcus xanthusphase transition

Identifiers

PMID26246416
PMCPMC4535398

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.