Evidence map›Paper›PMID 26245904›Full record

ArticleThe Journal of biological chemistry2015

Neil2-null Mice Accumulate Oxidized DNA Bases in the Transcriptionally Active Sequences of the Genome and Are Susceptible to Innate Inflammation.

Anirban Chakraborty, Maki Wakamiya, Tatiana Venkova-Canova, Raj K Pandita, Leopoldo Aguilera-Aguirre, Altaf H Sarker, Dharmendra Kumar Singh, Koa Hosoki, Thomas G Wood, Gulshan Sharma and 6 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 103 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Oxidative Stress and DNA Damage at Telomeres.Cold Spring Harbor perspectives in biology · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Research progress on the role of the NEIL family in cancer.Frontiers in cell and developmental biology · 2025
    Review
  12. Review
  13. Fructose-2,6-bisphosphate restores DNA repair activity of PNKP and ameliorates neurodegenerative symptoms in Huntington's disease.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Anirban ChakrabortyFrom the Department of Internal Medicine, Sealy Center for Molecular Medicine.
Maki WakamiyaDepartments of Neurology and Neuroscience and Cell Biology, Transgenic Mouse Core Facility, University of Texas Medical Branch, Galveston, Texas 77555.
Tatiana Venkova-CanovaFrom the Department of Internal Medicine, Sealy Center for Molecular Medicine.
Raj K Panditathe Department of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas 77030, and.
Leopoldo Aguilera-AguirreMicrobiology and Immunology, and.
Altaf H Sarkerthe Department of Cancer and DNA Damage Responses, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
Dharmendra Kumar Singhthe Department of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas 77030, and.
Koa HosokiFrom the Department of Internal Medicine, Sealy Center for Molecular Medicine.
Thomas G WoodBiochemistry and Molecular Biology, and.
Gulshan SharmaFrom the Department of Internal Medicine, Sealy Center for Molecular Medicine.
Victor CardenasFrom the Department of Internal Medicine, Sealy Center for Molecular Medicine.
Partha S SarkarDepartments of Neurology and Neuroscience and Cell Biology.
Sanjiv SurFrom the Department of Internal Medicine, Sealy Center for Molecular Medicine.
Tej K Panditathe Department of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas 77030, and.
Istvan BoldoghMicrobiology and Immunology, and.
Tapas K HazraFrom the Department of Internal Medicine, Sealy Center for Molecular Medicine, tkhazra@utmb.edu.
The University of Texas Medical Branch at Galveston · USHouston Methodist · USBipar · FRLawrence Berkeley National Laboratory · US

Funding

Virus, Tissue Culture and ImmunoassayP01AI062885 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI CASOLA, ANTONELLA · 2005 to 2022
$23.9M
Synthetic Organic Chemistry CoreP30ES006676 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ELFERINK, CORNELIS JOHAN · 1995 to 2017
$21.7M
Molecular Mechanisms of Environmental InjuryT32ES007254 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI AMEREDES, BILL T · 1990 to 2022
$6.6M
Preferential single-strand break repair in the active genes of mammalian cellsR01NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2012 to 2021
$3.3M
CHROMATIN MODIFYING FACTORS CONTROL RADIATION RESPONSE AND GENOMIC STABILITYR01CA129537 · NCI · WASHINGTON UNIVERSITY · PI PANDITA, TEJ K · 2008 to 2018
$3.3M
Tumor-cell-specific targets for combined hyperthermia and radiation effectsR01CA154320 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI PANDITA, TEJ K · 2010 to 2014
$1.6M
DNA double strand break repair deficiency and neurodegenerationR56NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2024 to 2024
$536k
NCI NIH HHS R01 CA129537NCI NIH HHS R01 CA154320NIAID NIH HHS P01 AI062885NIEHS NIH HHS P30 ES006676NIEHS NIH HHS P30 ES 06676NIEHS NIH HHS T32 ES007254NINDS NIH HHS NS073976NINDS NIH HHS R01 NS073976NINDS NIH HHS R56 NS073976
6 · The paper itself

Abstract

Why mammalian cells possess multiple DNA glycosylases (DGs) with overlapping substrate ranges for repairing oxidatively damaged bases via the base excision repair (BER) pathway is a long-standing question. To determine the biological role of these DGs, null animal models have been generated. Here, we report the generation and characterization of mice lacking Neil2 (Nei-like 2). As in mice deficient in each of the other four oxidized base-specific DGs (OGG1, NTH1, NEIL1, and NEIL3), Neil2-null mice show no overt phenotype. However, middle-aged to old Neil2-null mice show the accumulation of oxidative genomic damage, mostly in the transcribed regions. Immuno-pulldown analysis from wild-type (WT) mouse tissue showed the association of NEIL2 with RNA polymerase II, along with Cockayne syndrome group B protein, TFIIH, and other BER proteins. Chromatin immunoprecipitation analysis from mouse tissue showed co-occupancy of NEIL2 and RNA polymerase II only on the transcribed genes, consistent with our earlier in vitro findings on NEIL2's role in transcription-coupled BER. This study provides the first in vivo evidence of genomic region-specific repair in mammals. Furthermore, telomere loss and genomic instability were observed at a higher frequency in embryonic fibroblasts from Neil2-null mice than from the WT. Moreover, Neil2-null mice are much more responsive to inflammatory agents than WT mice. Taken together, our results underscore the importance of NEIL2 in protecting mammals from the development of various pathologies that are linked to genomic instability and/or inflammation. NEIL2 is thus likely to play an important role in long term genomic maintenance, particularly in long-lived mammals such as humans.

Indexed as

Transcription, GeneticAgingAnimalsCell LineDNADNA DamageDNA GlycosylasesGene Knockout TechniquesGenomeGenomic InstabilityHomeostasisHumansInflammationMiceOxidation-ReductionRNA Polymerase IIDNADNA GlycosylasesNeil2 protein, mouseRNA Polymerase IIDNA damageDNA damage and repairDNA enzymeDNA glycosylasegene knockoutinflammationknock-out animalsNEIL2reactive oxygen speciestranscription-coupled repair

Identifiers

PMID26245904
PMCPMC4598976
OpenAlexW2203735107

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.