Evidence map›Paper›PMID 26245366›Full record

ArticleVirology2015

Bacteriophage P22 ejects all of its internal proteins before its genome.

Yan Jin, Sophia M Sdao, John A Dover, Natalia B Porcek, Charles M Knobler, William M Gelbart, Kristin N Parent

Abstract read
In one paragraph

Article in Virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
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  4. Viral Genome Delivery Across Bacterial Cell Surfaces.Annual review of microbiology · 2024
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  6. The Next Generation of Drug Delivery: Harnessing the Power of Bacteriophages.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  7. Article
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  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Ecology, Structure, and Evolution ofAnnual review of virology · 2020
    Review
  16. Article
  17. Frontiers in microbiology · 2020
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yan JinDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095, USA.
Sophia M SdaoMichigan State University, Department of Biochemistry and Molecular Biology, East Lansing, MI 48824, USA.
John A DoverMichigan State University, Department of Biochemistry and Molecular Biology, East Lansing, MI 48824, USA.
Natalia B PorcekMichigan State University, Department of Biochemistry and Molecular Biology, East Lansing, MI 48824, USA; Michigan State University, Department of Microbiology and Molecular Genetics, East Lansing, MI 48824, USA.
Charles M KnoblerDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095, USA.
William M GelbartDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095, USA; Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA; California NanoSystems Institute, University of California, Los Angeles, CA 90095, USA. Electronic address: gelbart@chem.ucla.edu.
Kristin N ParentMichigan State University, Department of Biochemistry and Molecular Biology, East Lansing, MI 48824, USA. Electronic address: kparent@msu.edu.
Michigan State University · USUniversity of California, Los Angeles · USCalifornia NanoSystems Institute · US

Funding

Sf6 as a model system for understanding the mechanisms of virus: host recognitionR01GM110185 · NIGMS · MICHIGAN STATE UNIVERSITY · PI PARENT, KRISTIN N · 2015 to 2019
$1.4M
NIGMS NIH HHS R01 GM110185NIGMS NIH HHS R01GM110185
6 · The paper itself

Abstract

Double-stranded DNA bacteriophages are highly pressurized, providing a force driving ejection of a significant fraction of the genome from its capsid. In P22-like Podoviridae, internal proteins ("E proteins") are packaged into the capsid along with the genome, and without them the virus is not infectious. However, little is known about how and when these proteins come out of the virus. We employed an in vitro osmotic suppression system with high-molecular-weight polyethylene glycol to study P22 E protein release. While slow ejection of the DNA can be triggered by lipopolysaccharide (LPS), the rate is significantly enhanced by the membrane protein OmpA from Salmonella. In contrast, E proteins are not ejected unless both OmpA and LPS are present and their ejection when OmpA is present is largely complete before any genome is ejected, suggesting that E proteins play a key role in the early stage of transferring P22 DNA into the host.

Indexed as

Genome, ViralBacterial Outer Membrane ProteinsBacteriophage P22Biomechanical PhenomenaCapsidDNA, ViralLipopolysaccharidesOsmosisPolyethylene GlycolsSalmonella typhimuriumViral ProteinsVirus InternalizationBacterial Outer Membrane ProteinsDNA, ViralLipopolysaccharidesOMPA outer membrane proteinsPolyethylene GlycolsViral ProteinsBacteriophage infectivityGenome ejectionInternal protein ejectionOsmotic suppressionReceptors

Identifiers

PMID26245366
PMCPMC4619139
OpenAlexW1043989646

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.