Evidence map›Paper›PMID 26244741›Full record

ArticleBiophysical journal2015

The Signaling State of Orange Carotenoid Protein.

Eugene G Maksimov, Evgeny A Shirshin, Nikolai N Sluchanko, Dmitry V Zlenko, Evgenia Y Parshina, Georgy V Tsoraev, Konstantin E Klementiev, Gleb S Budylin, Franz-Josef Schmitt, Thomas Friedrich and 3 more

Abstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 99 citations in OpenAlex.

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  5. Adaptation processes inFrontiers in plant science · 2024
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  10. A favorable path to domain separation in the orange carotenoid protein.Protein science : a publication of the Protein Society · 2022
    Article
  11. Integrated Structural Studies for Elucidating Carotenoid-Protein Interactions.Advances in experimental medicine and biology · 2022
    Article
  12. Article
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  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Eugene G MaksimovDepartment of Biophysics, Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia. Electronic address: emaksimoff@yandex.ru.
Evgeny A ShirshinDepartment of Quantum Electronics, Faculty of Physics, M.V. Lomonosov Moscow State University, Moscow, Russia.
Nikolai N SluchankoA.N. Bach Institute of Biochemistry, Russian Academy of Sciences, Moscow, Russia.
Dmitry V ZlenkoDepartment of Biophysics, Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.
Evgenia Y ParshinaDepartment of Biophysics, Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.
Georgy V TsoraevDepartment of Biophysics, Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.
Konstantin E KlementievDepartment of Biophysics, Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.
Gleb S BudylinDepartment of Quantum Electronics, Faculty of Physics, M.V. Lomonosov Moscow State University, Moscow, Russia.
Franz-Josef SchmittInstitute of Chemistry, Max-Volmer Laboratory of Biophysical Chemistry, Technical University Berlin, Berlin, Germany.
Thomas FriedrichInstitute of Chemistry, Max-Volmer Laboratory of Biophysical Chemistry, Technical University Berlin, Berlin, Germany.
Victor V FadeevDepartment of Quantum Electronics, Faculty of Physics, M.V. Lomonosov Moscow State University, Moscow, Russia.
Vladimir Z PaschenkoDepartment of Biophysics, Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.
Andrew B RubinDepartment of Biophysics, Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.
Lomonosov Moscow State University · RUA N Bach Institute of Biochemistry · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Orange carotenoid protein (OCP) is the photoactive protein that is responsible for high light tolerance in cyanobacteria. We studied the kinetics of the OCP photocycle by monitoring changes in its absorption spectrum, intrinsic fluorescence, and fluorescence of the Nile red dye bound to OCP. It was demonstrated that all of these three methods provide the same kinetic parameters of the photocycle, namely, the kinetics of OCP relaxation in darkness was biexponential with a ratio of two components equal to 2:1 independently of temperature. Whereas the changes of the absorption spectrum of OCP characterize the geometry and environment of its chromophore, the intrinsic fluorescence of OCP reveals changes in its tertiary structure, and the fluorescence properties of Nile red indicate the exposure of hydrophobic surface areas of OCP to the solvent following the photocycle. The results of molecular-dynamics studies indicated the presence of two metastable conformations of 3'-hydroxyechinenone, which is consistent with characteristic changes in the Raman spectra. We conclude that rotation of the β-ionylidene ring in the C-terminal domain of OCP could be one of the first conformational rearrangements that occur during photoactivation. The obtained results suggest that the photoactivated form of OCP represents a molten globule-like state that is characterized by increased mobility of tertiary structure elements and solvent accessibility.

Indexed as

Molecular Dynamics SimulationAbsorption, RadiationAmino Acid SequenceBacterial ProteinsCyanobacteriaFluorescent DyesLuminescent ProteinsMolecular Sequence DataProtein BindingProtein Structure, TertiarySignal TransductionBacterial ProteinsFluorescent DyesLuminescent Proteins

Identifiers

PMID26244741
PMCPMC4572496
OpenAlexW1871527198

What OpenQuestion holds

Textmetadata
Read underepoch 390

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.