Evidence map›Paper›PMID 26244554›Full record

ArticlePloS one2015

Comparison of Leaf Sheath Transcriptome Profiles with Physiological Traits of Bread Wheat Cultivars under Salinity Stress.

Fuminori Takahashi, Joanne Tilbrook, Christine Trittermann, Bettina Berger, Stuart J Roy, Motoaki Seki, Kazuo Shinozaki, Mark Tester

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 38 citations in OpenAlex.

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  13. Mapping of novel salt tolerance QTL in an Excalibur × Kukri doubled haploid wheat population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Fuminori TakahashiBiomass Research Platform Team, RIKEN Center for Sustainable Resource Science, Koyadai, Tsukuba, Ibaraki, Japan; Gene Discovery Research Group, RIKEN Center for Sustainable Resource Science, Koyadai, Tsukuba, Ibaraki, Japan; The Plant Accelerator, Australian Plant Phenomics Facility, School of Agriculture, Food & Wine, University of Adelaide, Glen Osmond, Australia.
Joanne TilbrookAustralian Centre for Plant Functional Genomics, School of Agriculture, Food & Wine, University of Adelaide, Glen Osmond, Australia.
Christine TrittermannAustralian Centre for Plant Functional Genomics, School of Agriculture, Food & Wine, University of Adelaide, Glen Osmond, Australia.
Bettina BergerThe Plant Accelerator, Australian Plant Phenomics Facility, School of Agriculture, Food & Wine, University of Adelaide, Glen Osmond, Australia.
Stuart J RoyAustralian Centre for Plant Functional Genomics, School of Agriculture, Food & Wine, University of Adelaide, Glen Osmond, Australia.
Motoaki SekiPlant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, Japan.
Kazuo ShinozakiBiomass Research Platform Team, RIKEN Center for Sustainable Resource Science, Koyadai, Tsukuba, Ibaraki, Japan; Gene Discovery Research Group, RIKEN Center for Sustainable Resource Science, Koyadai, Tsukuba, Ibaraki, Japan.
Mark TesterAustralian Centre for Plant Functional Genomics, School of Agriculture, Food & Wine, University of Adelaide, Glen Osmond, Australia; The Plant Accelerator, Australian Plant Phenomics Facility, School of Agriculture, Food & Wine, University of Adelaide, Glen Osmond, Australia.
RIKEN Center for Sustainable Resource Science · JPUniversity of Adelaide · AUAustralian Centre for Plant Functional Genomics · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salinity stress has significant negative effects on plant biomass production and crop yield. Salinity tolerance is controlled by complex systems of gene expression and ion transport. The relationship between specific features of mild salinity stress adaptation and gene expression was analyzed using four commercial varieties of bread wheat (Triticum aestivum) that have different levels of salinity tolerance. The high-throughput phenotyping system in The Plant Accelerator at the Australian Plant Phenomics Facility revealed variation in shoot relative growth rate and salinity tolerance among the four cultivars. Comparative analysis of gene expression in the leaf sheaths identified genes whose functions are potentially linked to shoot biomass development and salinity tolerance. Early responses to mild salinity stress through changes in gene expression have an influence on the acquisition of stress tolerance and improvement in biomass accumulation during the early "osmotic" phase of salinity stress. In addition, results revealed transcript profiles for the wheat cultivars that were different from those of usual stress-inducible genes, but were related to those of plant growth. These findings suggest that, in the process of breeding, selection of specific traits with various salinity stress-inducible genes in commercial bread wheat has led to adaptation to mild salinity conditions.

Indexed as

Gene Expression Regulation, PlantSalinityTranscriptomeBiomassCluster AnalysisGenes, PlantOligonucleotide Array Sequence AnalysisPlant BreedingPlant LeavesPlant ProteinsPlant ShootsReverse Transcriptase Polymerase Chain ReactionSalt ToleranceSeedlingsSodium ChlorideStress, PhysiologicalPlant ProteinsSodium Chloride

Identifiers

PMID26244554
PMCPMC4526543
OpenAlexW988649566

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.