ArticleEvolutionary bioinformatics online2015
Effective Population Size and Signatures of Selection Using Bovine 50K SNP Chips in Korean Native Cattle (Hanwoo).
Article in Evolutionary bioinformatics online, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.
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Who cites it
15 citing papers in PubMed, 1 synthesis or guideline pooled it.
- A Meta-Assembly of Selection Signatures in Cattle.PloS one · 2016Pooled it
- Genomic insights into the admixture and diversity of Kerala crossbred cattle.Scientific reports · 2026Article
- Genome-wide scan for signatures of selection in Hanwoo and Angus cattle using whole-genome sequence data.PloS one · 2025Article
- Comparative assessment of the effective population size and linkage disequilibrium of Karan Fries cattle revealed viable population dynamics.Animal bioscience · 2024Article
- Genome-Wide Association Study to Identify QTL for Carcass Traits in Korean Hanwoo Cattle.Animals : an open access journal from MDPI · 2023Article
- Chromosome-level genome assembly of Korean native cattle and pangenome graph of 14 Bos taurus assemblies.Scientific data · 2023Article
- Genetic characteristics of Korean Jeju Black cattle with high density single nucleotide polymorphisms.Animal bioscience · 2021Article
- Genomic prediction for growth using a low-density SNP panel in dromedary camels.Scientific reports · 2021Article
- Article
- Identifying Loci Under Positive Selection in Yellow Korean Cattle (Hanwoo).Evolutionary bioinformatics online · 2019Article
- Genome-wide analysis of Hanwoo and Chikso populations using the BovineSNP50 genotyping array.Genes & genomics · 2018Article
- Genome-Wide SNP Data Revealed the Extent of Linkage Disequilibrium, Persistence of Phase and Effective Population Size in Purebred and Crossbred Buffalo Populations.Frontiers in genetics · 2018Article
- Accuracy of genomic breeding value prediction for intramuscular fat using different genomic relationship matrices in Hanwoo (Korean cattle).Asian-Australasian journal of animal sciences · 2017Article
- Predictive performance of genomic selection methods for carcass traits in Hanwoo beef cattle: impacts of the genetic architecture.Genetics, selection, evolution : GSE · 2017Article
- Demographic Trends in Korean Native Cattle Explained Using Bovine SNP50 Beadchip.Genomics & informatics · 2016Article
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2 authors.
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Abstract
Inferring the effective population size and the pattern of selection signatures is of interest both from an evolutionary perspective and to improve models for mapping of quantitative trait genes. We used DNA samples of 61 sires and 486 progeny of the Hanwoo, genotyped by the Illumina Bovine SNP50 BeadChip, to analyze the genetic structure. Our study showed a persistent decline in effective population size throughout the period considered, but suggested a marked decline at one distinctive time point (100th generation) and two sharp decline intervals (50th-25th generation and 25th-10th generation). This pattern can be explained by Hanwoo formation and the modern breeding program. Our results revealed 95 regions exhibiting the footprint of recent positive selection at a threshold level of 0.01. We found an overlap of the 11 core regions presenting top P-values and those that had previously been identified as harboring quantitative trait loci from other breeds. The information generated from this study can be used to better understand the mechanism of selection in Hanwoo breeding, and provide important implications for the design and application of association studies in the Hanwoo population.
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