Evidence map›Paper›PMID 26241858›Full record

ArticlePloS one2015

Genome-Wide Analysis of Hypoxia-Responsive Genes in the Rice Blast Fungus, Magnaporthe oryzae.

Jaehyuk Choi, Hyunjung Chung, Gir-Won Lee, Sun-Ki Koh, Suhn-Kee Chae, Yong-Hwan Lee

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
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  8. Article
  9. Morphological and transcriptomic analysis of attenuated and virulent strains of Phytophthora infestans.International microbiology : the official journal of the Spanish Society for Microbiology · 2022
    Article
  10. Article
  11. Article
  12. Review
  13. Host-Induced Gene Silencing ofFrontiers in plant science · 2019
    Article
  14. Article
  15. Article
  16. Phosphorylation-mediated Regulatory Networks in Mycelia ofMolecular & cellular proteomics : MCP · 2017
    Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Jaehyuk ChoiDivision of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University, Incheon 406-772, Korea.
Hyunjung ChungDepartment of Agricultural Biotechnology, Seoul National University, Seoul 151-921, Korea.
Gir-Won LeeFungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.
Sun-Ki KohDepartment of Biochemistry, Paichai University, Daejeon 302-735, Korea.
Suhn-Kee ChaeDepartment of Biochemistry, Paichai University, Daejeon 302-735, Korea.
Yong-Hwan LeeDepartment of Agricultural Biotechnology, Seoul National University, Seoul 151-921, Korea; Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea; Center for Fungal Pathogenesis, Seoul National University, Seoul 151-921, Korea; Center for Fungal Genetic Resources, Seoul National University, Seoul 151-921, Korea; Plant Genomics and Breeding Institute, Seoul National University, Seoul 151-921, Korea; Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Seoul National University · KRPai Chai University · KRIncheon National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice blast fungus, Magnaporthe oryzae, is the most destructive pathogen in the rice-growing area. This fungus has a biotrophic phase early in infection and later switches to a necrotrophic lifestyle. During the biotrophic phase, the fungus competes with its host for nutrients and oxygen. Continuous uptake of oxygen is essential for successful establishment of blast disease of this pathogen. Here, we report transcriptional responses of the fungus to oxygen limitation. Transcriptome analysis using RNA-Seq identified that 1,047 genes were up-regulated in response to hypoxia. Those genes are involved in mycelial development, sterol biosynthesis, and metal ion transport based on hierarchical GO terms, and are well-conserved among three fungal species. In addition, null mutants of two hypoxia-responsive genes were generated and their roles in fungal development and pathogenicity tested. The mutant for the sterol regulatory element-binding protein gene, MoSRE1, exhibited increased sensitivity to a hypoxia-mimicking agent, increased conidiation, and delayed invasive growth within host cells, which is suggestive of important roles in fungal development. However, such defects did not cause any significant decrease in disease severity. The other null mutant, for the alcohol dehydrogenase gene MoADH1, showed no defect in the hypoxia-mimicking condition (using cobalt chloride) and fungal development. Taken together, this comprehensive transcriptional profiling in response to a hypoxic condition with experimental validations would provide new insights into fungal development and pathogenicity in plant pathogenic fungi.

Indexed as

Genes, FungalAlcohol DehydrogenaseCell HypoxiaFungal ProteinsGene Expression Regulation, FungalGene OntologyGenome-Wide Association StudyMagnaportheMutationOryzaOxidative StressOxygenRNA, FungalRNA, MessengerSpecies SpecificitySterol Regulatory Element Binding ProteinsAlcohol DehydrogenaseFungal ProteinsOxygenRNA, FungalRNA, MessengerSterol Regulatory Element Binding Proteins

Identifiers

PMID26241858
PMCPMC4524601
OpenAlexW990167655

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.