Evidence map›Paper›PMID 26240355›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Crowded growth leads to the spontaneous evolution of semistable coexistence in laboratory yeast populations.

Evgeni M Frenkel, Michael J McDonald, J David Van Dyken, Katya Kosheleva, Gregory I Lang, Michael M Desai

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Ecological diversification in rapidly evolving populations.bioRxiv : the preprint server for biology · 2025
    Article
  5. Frequency-dependent fitness effects are ubiquitous.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Development of heat-shock resistance inApplied and environmental microbiology · 2023
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Evgeni M FrenkelDepartment of Organismic and Evolutionary Biology, Department of Physics, and Faculty of Arts and Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138; Program in Biophysics, Harvard University, Boston, MA 02115;
Michael J McDonaldDepartment of Organismic and Evolutionary Biology, Department of Physics, and Faculty of Arts and Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138;
J David Van DykenDepartment of Biology, University of Miami, Coral Gables, FL 33146;
Katya KoshelevaDepartment of Organismic and Evolutionary Biology, Department of Physics, and Faculty of Arts and Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138;
Gregory I LangDepartment of Biological Sciences, Lehigh University, Bethlehem, PA 18015.
Michael M DesaiDepartment of Organismic and Evolutionary Biology, Department of Physics, and Faculty of Arts and Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138; mdesai@oeb.harvard.edu.

Funding

Microbial Adaptation and the Statistics of Epistasis and PleiotropyR01GM104239 · NIGMS · HARVARD UNIVERSITY · PI DESAI, MICHAEL M · 2013 to 2025
$4.5M
NIGMS NIH HHS GM104239NIGMS NIH HHS GM831324NIGMS NIH HHS R01 GM104239
6 · The paper itself

Abstract

Identifying the mechanisms that create and maintain biodiversity is a central challenge in biology. Stable diversification of microbial populations often requires the evolution of differences in resource utilization. Alternatively, coexistence can be maintained by specialization to exploit spatial heterogeneity in the environment. Here, we report spontaneous diversification maintained by a related but distinct mechanism: crowding avoidance. During experimental evolution of laboratory Saccharomyces cerevisiae populations, we observed the repeated appearance of "adherent" (A) lineages able to grow as a dispersed film, in contrast to their crowded "bottom-dweller" (B) ancestors. These two types stably coexist because dispersal reduces interference competition for nutrients among kin, at the cost of a slower maximum growth rate. This tradeoff causes the frequencies of the two types to oscillate around equilibrium over the course of repeated cycles of growth, crowding, and dispersal. However, further coevolution of the A and B types can perturb and eventually destroy their coexistence over longer time scales. We introduce a simple mathematical model of this "semistable" coexistence, which explains the interplay between ecological and evolutionary dynamics. Because crowded growth generally limits nutrient access in biofilms, the mechanism we report here may be broadly important in maintaining diversity in these natural environments.

Indexed as

BiodiversityBiological EvolutionEnvironmentAlgorithmsAntifungal AgentsEcosystemFluconazoleMiconazoleModels, BiologicalPopulation DensityPopulation DynamicsSaccharomyces cerevisiaeTime-Lapse ImagingAntifungal AgentsFluconazoleMiconazolecoexistencecrowdingexperimental evolutionfungal adherence

Identifiers

PMID26240355
PMCPMC4568650

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.