Evidence map›Paper›PMID 26240322›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Consecutive radical S-adenosylmethionine methylations form the ethyl side chain in thienamycin biosynthesis.

Daniel R Marous, Evan P Lloyd, Andrew R Buller, Kristos A Moshos, Tyler L Grove, Anthony J Blaszczyk, Squire J Booker, Craig A Townsend

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 89 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. ThnL, a B12-dependent radicalProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Biosynthesis of 3-thia-α-amino acids on a carrier peptide.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Cobalamin-Dependent RadicalACS bio & med chem Au · 2022
    Review
  9. The Atypical Cobalamin-DependentJournal of the American Chemical Society · 2022
    Article
  10. Article
  11. Structure of a BNature · 2022
    Article
  12. Article
  13. Studies of GenK and OxsB, two BMethods in enzymology · 2022
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Daniel R MarousDepartment of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine, Baltimore, MD 21205;
Evan P LloydDepartment of Chemistry, Johns Hopkins University, Baltimore, MD 21218;
Andrew R BullerDepartment of Biophysics, Johns Hopkins University, Baltimore, MD 21218;
Kristos A MoshosDepartment of Chemistry, Johns Hopkins University, Baltimore, MD 21218;
Tyler L GroveDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802;
Anthony J BlaszczykDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802.
Squire J BookerDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802; Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802.
Craig A TownsendDepartment of Chemistry, Johns Hopkins University, Baltimore, MD 21218; ctownsend@jhu.edu.
Johns Hopkins University · USPennsylvania State University · USJohns Hopkins Medicine · US

Funding

Biosynthesis of Beta Lactam AntibioticsR01AI121072 · NIAID · JOHNS HOPKINS UNIVERSITY · PI TOWNSEND, CRAIG ARTHUR · 2016 to 2025
$4.9M
B LACTAM AND AMINO ACID DERIVED ANTIBIOTIC BIOSYNTHESISR01AI014937 · NIAID · JOHNS HOPKINS UNIVERSITY · PI TOWNSEND, CRAIG A · 1985 to 2003
$1.5M
Functionalization of unactivated sp2-hybridized carbon atomsR01GM103268 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI BOLLINGER, JOSEPH M, BOOKER, SQUIRE J. · 2012 to 2015
$1.3M
Biosynthesis of Beta-Lactam AntibioticsR56AI014937 · NIAID · JOHNS HOPKINS UNIVERSITY · PI TOWNSEND, CRAIG ARTHUR · 2014 to 2014
$383k
NIAID NIH HHS AI01437NIAID NIH HHS R01 AI014937NIAID NIH HHS R01 AI121072NIAID NIH HHS R56 AI014937NIGMS NIH HHS GM103268NIGMS NIH HHS R01 GM103268
6 · The paper itself

Abstract

Despite their broad anti-infective utility, the biosynthesis of the paradigm carbapenem antibiotic, thienamycin, remains largely unknown. Apart from the first two steps shared with a simple carbapenem, the pathway sharply diverges to the more structurally complex members of this class of β-lactam antibiotics, such as thienamycin. Existing evidence points to three putative cobalamin-dependent radical S-adenosylmethionine (RS) enzymes, ThnK, ThnL, and ThnP, as potentially being responsible for assembly of the ethyl side chain at C6, bridgehead epimerization at C5, installation of the C2-thioether side chain, and C2/3 desaturation. The C2 substituent has been demonstrated to be derived by stepwise truncation of CoA, but the timing of these events with respect to C2-S bond formation is not known. We show that ThnK of the three apparent cobalamin-dependent RS enzymes performs sequential methylations to build out the C6-ethyl side chain in a stereocontrolled manner. This enzymatic reaction was found to produce expected RS methylase coproducts S-adenosylhomocysteine and 5'-deoxyadenosine, and to require cobalamin. For double methylation to occur, the carbapenam substrate must bear a CoA-derived C2-thioether side chain, implying the activity of a previous sulfur insertion by an as-yet unidentified enzyme. These insights allow refinement of the central steps in complex carbapenem biosynthesis.

Indexed as

DNA MethylationAnti-Bacterial Agentsbeta-LactamsCarbapenemsCatalysisCephalosporinsChromatography, LiquidCloning, MolecularDrug DesignEscherichia coliFermentationMethylationPenicillinsS-AdenosylmethionineStreptomycesTandem Mass SpectrometryAnti-Bacterial Agentsbeta-LactamsCarbapenemsCephalosporinsPenicillinsS-AdenosylmethioninethienamycinThienamycinsVitamin B 12carbapenemcobalaminmethylaseradical SAMβ-lactam antibiotics

Identifiers

PMID26240322
PMCPMC4547291
OpenAlexW1869309785

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.