Evidence map›Paper›PMID 26240321›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Oxidative cyclizations in orthosomycin biosynthesis expand the known chemistry of an oxygenase superfamily.

Kathryn M McCulloch, Emilianne K McCranie, Jarrod A Smith, Maruf Sarwar, Jeannette L Mathieu, Bryan L Gitschlag, Yu Du, Brian O Bachmann, T M Iverson

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. An NADH/NADApplied and environmental microbiology · 2024
    Article
  5. Article
  6. Review
  7. Orthoester formation in fungal meroterpenoid austalide F biosynthesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Activation modes in biocatalytic radical cyclization reactions.Journal of industrial microbiology & biotechnology · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Divergent non-heme iron enzymes in the nogalamycin biosynthetic pathway.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Kathryn M McCullochDepartment of Pharmacology, Vanderbilt University, Nashville, TN 37232;
Emilianne K McCranieDepartment of Chemistry, Vanderbilt University, Nashville, TN 37235;
Jarrod A SmithDepartment of Biochemistry, Vanderbilt University, Nashville, TN 37232.
Maruf SarwarDepartment of Pharmacology, Vanderbilt University, Nashville, TN 37232;
Jeannette L MathieuDepartment of Pharmacology, Vanderbilt University, Nashville, TN 37232;
Bryan L GitschlagDepartment of Pharmacology, Vanderbilt University, Nashville, TN 37232;
Yu DuDepartment of Chemistry, Vanderbilt University, Nashville, TN 37235;
Brian O BachmannDepartment of Chemistry, Vanderbilt University, Nashville, TN 37235; Department of Biochemistry, Vanderbilt University, Nashville, TN 37232 brian.bachmann@vanderbilt.edu tina.iverson@vanderbilt.edu.
T M IversonDepartment of Pharmacology, Vanderbilt University, Nashville, TN 37232; Department of Biochemistry, Vanderbilt University, Nashville, TN 37232 brian.bachmann@vanderbilt.edu tina.iverson@vanderbilt.edu.
Vanderbilt University · US

Funding

TRAINING GRANT IN MECHANISMS OF VASCULAR DISEASET32HL007751 · NHLBI · VANDERBILT UNIVERSITY · PI BOCK, PAUL E · 1994 to 2014
$6.6M
Crystallographic AutomationS10RR026915 · NCRR · VANDERBILT UNIVERSITY · PI IVERSON, T M · 2010 to 2010
$490k
NCRR NIH HHS S10 RR026915NHLBI NIH HHS T32 HL007751NHLBI NIH HHS T32HL007751
6 · The paper itself

Abstract

Orthosomycins are oligosaccharide antibiotics that include avilamycin, everninomicin, and hygromycin B and are hallmarked by a rigidifying interglycosidic spirocyclic ortho-δ-lactone (orthoester) linkage between at least one pair of carbohydrates. A subset of orthosomycins additionally contain a carbohydrate capped by a methylenedioxy bridge. The orthoester linkage is necessary for antibiotic activity but rarely observed in natural products. Orthoester linkage and methylenedioxy bridge biosynthesis require similar oxidative cyclizations adjacent to a sugar ring. We have identified a conserved group of nonheme iron, α-ketoglutarate-dependent oxygenases likely responsible for this chemistry. High-resolution crystal structures of the EvdO1 and EvdO2 oxygenases of everninomicin biosynthesis, the AviO1 oxygenase of avilamycin biosynthesis, and HygX of hygromycin B biosynthesis show how these enzymes accommodate large substrates, a challenge that requires a variation in metal coordination in HygX. Excitingly, the ternary complex of HygX with cosubstrate α-ketoglutarate and putative product hygromycin B identified an orientation of one glycosidic linkage of hygromycin B consistent with metal-catalyzed hydrogen atom abstraction from substrate. These structural results are complemented by gene disruption of the oxygenases evdO1 and evdMO1 from the everninomicin biosynthetic cluster, which demonstrate that functional oxygenase activity is critical for antibiotic production. Our data therefore support a role for these enzymes in the production of key features of the orthosomycin antibiotics.

Indexed as

AminoglycosidesAnti-Bacterial AgentsCatalytic DomainCrystallography, X-RayCyclizationHydrogenHygromycin BMetalsMicromonosporaMultigene FamilyOligosaccharidesOpen Reading FramesOxidation-ReductionOxygenOxygenasesPhylogenyAminoglycosidesAnti-Bacterial AgentsavilamycinevernimicinHydrogenHygromycin BMetalsOligosaccharidesOxygenOxygenasesantibiotic biosynthesiscrystal structurenonheme iron α-ketoglutarate–dependent oxygenasesoxidative cyclization

Identifiers

PMID26240321
PMCPMC4577193
OpenAlexW1923805818

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.