Evidence map›Paper›PMID 26239979›Full record

ArticleAntimicrobial agents and chemotherapy2015

Rapid, Semiquantitative Assay To Discriminate among Compounds with Activity against Replicating or Nonreplicating Mycobacterium tuberculosis.

Ben Gold, Julia Roberts, Yan Ling, Landys Lopez Quezada, Jou Glasheen, Elaine Ballinger, Selin Somersan-Karakaya, Thulasi Warrier, J David Warren, Carl Nathan

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. ACS medicinal chemistry letters · 2023
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Identification of β-Lactams Active againstACS infectious diseases · 2022
    Article
  12. Tools to develop antibiotic combinations that target drug tolerance inFrontiers in cellular and infection microbiology · 2022
    Review
  13. Oxidative damage and delayed replication allow viableScience translational medicine · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ben GoldDepartments of Microbiology and Immunology, Weill Cornell Medical College, New York, New York, USA bsg2001@med.cornell.edu.
Julia RobertsDepartments of Microbiology and Immunology, Weill Cornell Medical College, New York, New York, USA.
Yan LingDepartments of Microbiology and Immunology, Weill Cornell Medical College, New York, New York, USA.
Landys Lopez QuezadaDepartments of Microbiology and Immunology, Weill Cornell Medical College, New York, New York, USA.
Jou GlasheenDepartments of Microbiology and Immunology, Weill Cornell Medical College, New York, New York, USA.
Elaine BallingerDepartments of Microbiology and Immunology, Weill Cornell Medical College, New York, New York, USA.
Selin Somersan-KarakayaDepartment of Medicine, Weill Cornell Medical College, New York, New York, USA.
Thulasi WarrierDepartments of Microbiology and Immunology, Weill Cornell Medical College, New York, New York, USA.
J David WarrenMilstein Chemistry Core Facility, Weill Cornell Medical College, New York, New York, USA.
Carl NathanDepartments of Microbiology and Immunology, Weill Cornell Medical College, New York, New York, USA.

Funding

Viable but Nonculturable MtbU19AI111143 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI GLICKMAN, MICHAEL S, NATHAN, CARL FRANCIS · 2014 to 2020
$48.6M
Calanolides as tools to find new drug targets for Mycobacterium tuberculosisK08AI108799 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI SOMERSAN-KARAKAYA, SELIN S · 2014 to 2018
$921k
NIAID NIH HHS K08 AI108799NIAID NIH HHS K08AI108799NIAID NIH HHS U19 AI111143
6 · The paper itself

Abstract

The search for drugs that can kill replicating and nonreplicating Mycobacterium tuberculosis faces practical bottlenecks. Measurement of CFU and discrimination of bacteriostatic from bactericidal activity are costly in compounds, supplies, labor, and time. Testing compounds against M. tuberculosis under conditions that prevent the replication of M. tuberculosis often involves a second phase of the test in which conditions are altered to permit the replication of bacteria that survived the first phase. False-positive determinations of activity against nonreplicating M. tuberculosis may arise from carryover of compounds from the nonreplicating stage of the assay that act in the replicating stage. We mitigate these problems by carrying out a 96-well microplate liquid MIC assay and then transferring an aliquot of each well to a second set of plates in which each well contains agar supplemented with activated charcoal. After 7 to 10 days-about 2 weeks sooner than required to count CFU-fluorometry reveals whether M. tuberculosis bacilli in each well have replicated extensively enough to reduce a resazurin dye added for the final hour. This charcoal agar resazurin assay (CARA) distinguishes between bacterial biomasses in any two wells that differ by 2 to 3 log10 CFU. The CARA thus serves as a pretest and semiquantitative surrogate for longer, more laborious, and expensive CFU-based assays, helps distinguish bactericidal from bacteriostatic activity, and identifies compounds that are active under replicating conditions, nonreplicating conditions, or both. Results for 14 antimycobacterial compounds, including tuberculosis (TB) drugs, revealed that PA-824 (pretomanid) and TMC207 (bedaquiline) are largely bacteriostatic.

Indexed as

Biological AssayAgarAntitubercular AgentsCharcoalColony Count, MicrobialColoring AgentsDiarylquinolinesFluorometryMicrobial Sensitivity TestsMycobacterium tuberculosisNitroimidazolesOxazinesXanthenesAgarAntitubercular AgentsbedaquilineCharcoalColoring AgentsDiarylquinolinesNitroimidazolesOxazinespretomanidresazurinXanthenes

Identifiers

PMID26239979
PMCPMC4576094

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.