Evidence map›Paper›PMID 26238661›Full record

ArticleAmerican journal of medical genetics. Part A2015

Rare variants in the notch signaling pathway describe a novel type of autosomal recessive Klippel-Feil syndrome.

Ender Karaca, Ozge O Yuregir, Sevcan T Bozdogan, Huseyin Aslan, Davut Pehlivan, Shalini N Jhangiani, Zeynep C Akdemir, Tomasz Gambin, Yavuz Bayram, Mehmed M Atik and 5 more

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In one paragraph

Article in American journal of medical genetics. Part A, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Notch signaling pathway: architecture, disease, and therapeutics.Signal transduction and targeted therapy · 2022
    Review
  9. Frontiers in cell and developmental biology · 2022
    Article
  10. Clan genomics: From OMIM phenotypic traits to genes and biology.American journal of medical genetics. Part A · 2021
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. IncreasedJournal of medical genetics · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Ender KaracaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Ozge O YuregirDepartment of Medical Genetics, Numune Training and Research Hospital, Adana, Turkey.
Sevcan T BozdoganDepartment of Medical Genetics, Mersin University, Mersin, Turkey.
Huseyin AslanDepartment of Medical Genetics, Medical Faculty of Eskisehir Osmangazi University, Eskisehir, Turkey.
Davut PehlivanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Shalini N JhangianiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Zeynep C AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Tomasz GambinDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Yavuz BayramDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Mehmed M AtikDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Serkan ErdinCenter for Human Genetic Research, Massachusetts General Hospital, Boston, Massachusetts.
Donna MuznyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Baylor-Hopkins Center for Mendelian Genomics
Baylor College of Medicine · USBaylor Genetics · USBroad Institute · USEskişehir Osmangazi University · TRMersin Üniversitesi · TR

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
NHGRI NIH HHS U54 HG006542NHGRI NIH HHS U54HG006542NHGRI NIH HHS UM1 HG006542
6 · The paper itself

Abstract

Klippel-Feil syndrome is a rare disorder represented by a subgroup of segmentation defects of the vertebrae and characterized by fusion of the cervical vertebrae, low posterior hairline, and short neck with limited motion. Both autosomal dominant and recessive inheritance patterns were reported in families with Klippel-Feil. Mutated genes for both dominant (GDF6 and GDF3) and recessive (MEOX1) forms of Klippel-Feil syndrome have been shown to be involved in somite development via transcription regulation and signaling pathways. Heterotaxy arises from defects in proteins that function in the development of left-right asymmetry of the developing embryo. We describe a consanguineous family with a male proband who presents with classical Klippel-Feil syndrome together with heterotaxy (situs inversus totalis). The present patient also had Sprengel's deformity, deformity of the sternum, and a solitary kidney. Using exome sequencing, we identified a homozygous frameshift mutation (c.299delT; p.L100fs) in RIPPLY2, a gene shown to play a crucial role in somitogenesis and participate in the Notch signaling pathway via negatively regulating Tbx6. Our data confirm RIPPLY2 as a novel gene for autosomal recessive Klippel-Feil syndrome, and in addition-from a mechanistic standpoint-suggest the possibility that mutations in RIPPLY2 could also lead to heterotaxy. © 2015 Wiley Periodicals, Inc.

Indexed as

AdolescentBase SequenceFemaleHumansKlippel-Feil SyndromeMaleMolecular Sequence DataMutationPedigreeRadiographyReceptors, NotchSignal TransductionSpineReceptors, NotchheterotaxyKlippel-Feil syndromenotch signalingright-left axis determinationsomitogenesis

Identifiers

PMID26238661
PMCPMC4837953
OpenAlexW2125682123

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.