Evidence map›Paper›PMID 26238561›Full record

ArticleCell stress & chaperones2015

Transcriptome response to heat stress in a chicken hepatocellular carcinoma cell line.

Liang Sun, Susan J Lamont, Amanda M Cooksey, Fiona McCarthy, Catalina O Tudor, K Vijay-Shanker, Rachael M DeRita, Max Rothschild, Chris Ashwell, Michael E Persia and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Cell stress & chaperones, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 80 citations in OpenAlex.

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  17. Genome evolution of blind subterranean mole rats: Adaptive peripatric versus sympatric speciation.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Liang SunDepartment of Animal and Food Sciences, University of Delaware, Newark, DE, 19716, USA.
Susan J LamontDepartment of Animal Science, Iowa State University, Ames, IA, 50011, USA.
Amanda M CookseySchool of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, AZ, 85721, USA.
Fiona McCarthySchool of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, AZ, 85721, USA.
Catalina O TudorDepartment of Computer and Information Sciences, University of Delaware, Newark, DE, 19716, USA.
K Vijay-ShankerDepartment of Computer and Information Sciences, University of Delaware, Newark, DE, 19716, USA.
Rachael M DeRitaDepartment of Animal and Food Sciences, University of Delaware, Newark, DE, 19716, USA.
Max RothschildDepartment of Animal Science, Iowa State University, Ames, IA, 50011, USA.
Chris AshwellDepartment of Poultry Science, North Carolina State University, Raleigh, NC, 27695, USA.
Michael E PersiaDepartment of Animal Science, Iowa State University, Ames, IA, 50011, USA.
Carl J SchmidtDepartment of Animal and Food Sciences, University of Delaware, Newark, DE, 19716, USA. schmidtc@udel.edu.ORCID http://orcid.org/0000-0002-8386-4781
University of Delaware · USIowa State University · USUniversity of Arizona · USNorth Carolina State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heat stress triggers an evolutionarily conserved set of responses in cells. The transcriptome responds to hyperthermia by altering expression of genes to adapt the cell or organism to survive the heat challenge. RNA-seq technology allows rapid identification of environmentally responsive genes on a large scale. In this study, we have used RNA-seq to identify heat stress responsive genes in the chicken male white leghorn hepatocellular (LMH) cell line. The transcripts of 812 genes were responsive to heat stress (p < 0.01) with 235 genes upregulated and 577 downregulated following 2.5 h of heat stress. Among the upregulated were genes whose products function as chaperones, along with genes affecting collagen synthesis and deposition, transcription factors, chromatin remodelers, and genes modulating the WNT and TGF-beta pathways. Predominant among the downregulated genes were ones that affect DNA replication and repair along with chromosomal segregation. Many of the genes identified in this study have not been previously implicated in the heat stress response. These data extend our understanding of the transcriptome response to heat stress with many of the identified biological processes and pathways likely to function in adapting cells and organisms to hyperthermic stress. Furthermore, this study should provide important insight to future efforts attempting to improve species abilities to withstand heat stress through genome-wide association studies and breeding.

Indexed as

AnimalsCarcinoma, HepatocellularCell Line, TumorChickensHeat-Shock ResponseHot TemperatureTranscriptomeChickenHeat stressLMH cellsRNA-seqTranscriptome

Identifiers

PMID26238561
PMCPMC4595433
OpenAlexW1903430549

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.