Evidence map›Paper›PMID 26237670›Full record

ArticleJournal of the American Chemical Society2015

Anaerobic 5-Hydroxybenzimidazole Formation from Aminoimidazole Ribotide: An Unanticipated Intersection of Thiamin and Vitamin B₁₂ Biosynthesis.

Angad P Mehta, Sameh H Abdelwahed, Michael K Fenwick, Amrita B Hazra, Michiko E Taga, Yang Zhang, Steven E Ealick, Tadhg P Begley

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. On the Evolutionary History of the Twenty Encoded Amino Acids.Chemistry (Weinheim an der Bergstrasse, Germany) · 2022
    Review
  6. Exchange of Vitamin BJournal of bacteriology · 2022
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Structural studies of viperin, an antiviral radical SAM enzyme.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Microbial production of vitamin BMicrobial cell factories · 2017
    Review
  17. Review
  18. Article
  19. Anaerobic biosynthesis of the lower ligand of vitamin B12.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Angad P MehtaDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
Sameh H AbdelwahedDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
Michael K FenwickDepartment of Chemistry and Chemical Biology, Cornell University , 120 Baker Lab, Ithaca, New York 14853, United States.
Amrita B HazraDepartment of Plant and Microbial Biology, University of California , Berkeley, California 94720, United States.
Michiko E TagaDepartment of Plant and Microbial Biology, University of California , Berkeley, California 94720, United States.
Yang ZhangDepartment of Chemistry and Chemical Biology, Cornell University , 120 Baker Lab, Ithaca, New York 14853, United States.
Steven E EalickDepartment of Chemistry and Chemical Biology, Cornell University , 120 Baker Lab, Ithaca, New York 14853, United States.
Tadhg P BegleyDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
Cornell University · USTexas A&M University · USUniversity of California, Berkeley · USNational Research Centre · EG

Funding

Structural Studies of Enzymes of Thiamin BiosynthesisR01DK067081 · NIDDK · CORNELL UNIVERSITY ITHACA · PI EALICK, STEVEN E · 2005 to 2017
$4.2M
The mechanistic enzymology of thiamin biosynthesisR37DK044083 · NIDDK · TEXAS A&M UNIVERSITY · PI BEGLEY, TADHG P. · 2008 to 2017
$3.7M
The mechanistic enzymology of thiamin biosynthesisR01DK044083 · NIDDK · CORNELL UNIVERSITY ITHACA · PI BEGLEY, TADHG P. · 1991 to 2007
$2.5M
The mechanistic enzymology of thiamin biosynthesisR56DK044083 · NIDDK · TEXAS A&M UNIVERSITY · PI BEGLEY, TADHG P. · 2019 to 2019
$150k
NIDDK NIH HHS DK067081NIDDK NIH HHS DK44083NIDDK NIH HHS R01 DK044083NIDDK NIH HHS R01 DK067081NIDDK NIH HHS R37 DK044083NIDDK NIH HHS R56 DK044083
6 · The paper itself

Abstract

Comparative genomics of the bacterial thiamin pyrimidine synthase (thiC) revealed a paralogue of thiC (bzaF) clustered with anaerobic vitamin B12 biosynthetic genes. Here we demonstrate that BzaF is a radical S-adenosylmethionine enzyme that catalyzes the remarkable conversion of aminoimidazole ribotide (AIR) to 5-hydroxybenzimidazole (5-HBI). We identify the origin of key product atoms and propose a reaction mechanism. These studies represent the first step in solving a long-standing problem in anaerobic vitamin B12 assembly and reveal an unanticipated intersection of thiamin and vitamin B12 biosynthesis.

Indexed as

AnaerobiosisBacterial ProteinsBenzimidazolesBiocatalysisModels, MolecularProtein ConformationRibonucleotidesThiamineVitamin B 125-hydroxybenzimidazoleaminoimidazole ribotideBacterial ProteinsBenzimidazolesRibonucleotidesThiamineVitamin B 12

Identifiers

PMID26237670
PMCPMC4753784
OpenAlexW1070724199

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.