Evidence map›Paper›PMID 26235284›Full record

ArticleNature communications2015

The mechanochemistry of copper reports on the directionality of unfolding in model cupredoxin proteins.

Amy E M Beedle, Ainhoa Lezamiz, Guillaume Stirnemann, Sergi Garcia-Manyes

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 66 citations in OpenAlex.

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  19. Thy-1, a Pathfinder Protein for the Post-genomic Era.Frontiers in cell and developmental biology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Amy E M BeedleDepartment of Physics, King's College London, London WC2R 2LS, UK.
Ainhoa LezamizRandall Division of Cell and Molecular Biophysics, King's College London, London WC2R 2LS, UK.
Guillaume StirnemannCNRS - Institut de Biologie Physico-Chimique - PSL Research University, Laboratoire de Biochimie Théorique, 75005 Paris, France.
Sergi Garcia-ManyesDepartment of Physics, King's College London, London WC2R 2LS, UK.
King's College London · GBUniversité Paris Sciences et Lettres · FR

Funding

Biotechnology and Biological Sciences Research Council BB/J00992X/1Biotechnology and Biological Sciences Research Council J00992X/1
6 · The paper itself

Abstract

Understanding the directionality and sequence of protein unfolding is crucial to elucidate the underlying folding free energy landscape. An extra layer of complexity is added in metalloproteins, where a metal cofactor participates in the correct, functional fold of the protein. However, the precise mechanisms by which organometallic interactions are dynamically broken and reformed on (un)folding are largely unknown. Here we use single molecule force spectroscopy AFM combined with protein engineering and MD simulations to study the individual unfolding pathways of the blue-copper proteins azurin and plastocyanin. Using the nanomechanical properties of the native copper centre as a structurally embedded molecular reporter, we demonstrate that both proteins unfold via two independent, competing pathways. Our results provide experimental evidence of a novel kinetic partitioning scenario whereby the protein can stochastically unfold through two distinct main transition states placed at the N and C termini that dictate the direction in which unfolding occurs.

Indexed as

Protein UnfoldingAzurinBacterial ProteinsCopperEscherichia coliMicroscopy, Atomic ForceMolecular Dynamics SimulationNanotechnologyPlant ProteinsPlastocyaninProtein Structure, SecondaryProtein Structure, TertiarySpectrum AnalysisAzurinBacterial ProteinsCoppercupredoxinPlant ProteinsPlastocyanin

Identifiers

PMID26235284
PMCPMC4532836
OpenAlexW1944561830

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.