ArticlePlanta2015
A high-density genetic map for P genome of Agropyron Gaertn. based on specific-locus amplified fragment sequencing (SLAF-seq).
Article in Planta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- Chromosomal mapping of a major genetic locus from Agropyron cristatum chromosome 6P that influences grain number and spikelet number in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genetic analysis of resistance to powdery mildew on 7MBMC plant biology · 2022Article
- Investigation of genetic relationships within three Miscanthus species using SNP markers identified with SLAF-seq.BMC genomics · 2022Article
- Cytogenetic identification and molecular marker development of a novel wheat-Frontiers in plant science · 2022Article
- Identification of 5P Chromosomes in Wheat-Frontiers in plant science · 2022Article
- Four-Year and Five-Developing-Stage Dynamic QTL Mapping for Tiller Number in the Hybrid Population ofFrontiers in plant science · 2022Article
- Molecular Cytogenetic Identification of Wheat-International journal of molecular sciences · 2020Article
- The Wheat 660K SNP array demonstrates great potential for marker-assisted selection in polyploid wheat.Plant biotechnology journal · 2020Review
- Advancing crested wheatgrass [Agropyron cristatum (L.) Gaertn.] breeding through genotyping-by-sequencing and genomic selection.PloS one · 2020Article
- Pairing and Exchanging betweenInternational journal of molecular sciences · 2019Article
- Identification of QTLs for Stripe Rust Resistance in a Recombinant Inbred Line Population.International journal of molecular sciences · 2019Article
- From markers to genome-based breeding in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Review
- Genomic approaches for studying crop evolution.Genome biology · 2018Review
- High-density genetic map construction and comparative genome analysis in asparagus bean.Scientific reports · 2018Article
- Wheat genetic resources in the post-genomics era: promise and challenges.Annals of botany · 2018Review
- Construction of Agropyron Gaertn. genetic linkage maps using a wheat 660K SNP array reveals a homoeologous relationship with the wheat genome.Plant biotechnology journal · 2018Article
- QTL Mapping Combined With Bulked Segregant Analysis Identify SNP Markers Linked to Leaf Shape Traits inFrontiers in genetics · 2018Article
- QTL Mapping of Six Spike and Stem Traits in Hybrid Population ofFrontiers in plant science · 2018Article
- Article
- The First Genetic Map in Sweet Osmanthus (Frontiers in plant science · 2017Article
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MAIN
conclusionThis genetic map for Agropyron Gaertn. contained 1023 markers on seven linkage groups, with a total of 907.8 cM and an average distance of 1.5 cM between adjacent loci. Many wheat- Agropyron cristatum derivative lines exhibit superior agronomic traits, and part of them are valuable for future wheat breeding. To date, no high-density genetic map for Agropyron Gaertn. has been published. Specific-locus amplified fragment sequencing (SLAF-seq), a recently developed strategy for large scale de novo discovery and genotyping of single nucleotide polymorphisms (SNPs), was employed in this study to develop sufficient markers for a segregating Agropyron F1 population derived from an interspecific cross between two cross-pollinated diploid collections A. cristatum (L.) Beauv. 'Z1842' and A. mongolicum Keng 'Z2098'. In total, we obtained raw data consisting of 128,932,358 pair-end reads of ~80 bp long after sequencing. Then 69,325 high-quality SLAFs were detected, of which 26,248 SLAFs were polymorphic and 1752 of the polymorphic markers were used for the genetic map construction. The final map contained 1023 markers on the seven linkage groups (LGs), which spanned a total of 907.8 cM with an average number of 146 markers and 89 loci per LG and an average distance of 1.5 cM between adjacent loci. To our knowledge, this map is the densest genetic linkage map for Agropyron so far. Through BLAT alignment of Agropyron SLAF marker sequences with the draft genome assemblies of wheat and barley, the Agropyron LGs were assigned as LG1-7 according to their corresponding homoeologous chromosomal groups of wheat. Results of this study will not only provide a platform for gene/QTL fine mapping, but also serve as a reference to assist the assembling of the P genome sequence in future.
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