Evidence map›Paper›PMID 26232558›Full record

ArticleBiochimica et biophysica acta2015

Incorporation of charged residues in the CYP2J2 F-G loop disrupts CYP2J2-lipid bilayer interactions.

Daniel R McDougle, Javier L Baylon, Daryl D Meling, Amogh Kambalyal, Yelena V Grinkova, Jared Hammernik, Emad Tajkhorshid, Aditi Das

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Daniel R McDougle *Department of Comparative Biosciences, University of Illinois Urbana-Champaign, Urbana IL 61801.
Javier L Baylon *Center for Biophysics and Computational Biology, University of Illinois Urbana-Champaign, Urbana IL 61801.
Daryl D MelingDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana IL 61801.
Amogh KambalyalDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana IL 61801.
Yelena V GrinkovaDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana IL 61801.
Jared HammernikDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana IL 61801.
Emad TajkhorshidDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana IL 61801.
Aditi DasDepartment of Comparative Biosciences, University of Illinois Urbana-Champaign, Urbana IL 61801.
University of Illinois Urbana-Champaign · US

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI BOWIE, JAMES U · 2010 to 2017
$31.9M
WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Understanding the role of phospholipids in integrin signalingR01GM101048 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SLIGAR, STEPHEN G. · 2012 to 2015
$1.1M
Acquisition of a Triple Quadrupole Mass SpectrometerS10RR024516 · NCRR · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI LI, ZHONG · 2009 to 2009
$469k
NCRR NIH HHS S10 RR024516NCRR NIH HHS S10-RR024516NIGMS NIH HHS P41 GM104601NIGMS NIH HHS P41-GM104601NIGMS NIH HHS R01 GM101048NIGMS NIH HHS R01-GM101048NIGMS NIH HHS U54 GM087519NIGMS NIH HHS U54-GM087519
6 · The paper itself

Abstract

CYP2J2 epoxygenase is an extrahepatic, membrane bound cytochrome P450 (CYP) that is primarily found in the heart and mediates endogenous fatty acid metabolism. CYP2J2 interacts with membranes through an N-terminal anchor and various non-contiguous hydrophobic residues. The molecular details of the motifs that mediate membrane interactions are complex and not fully understood. To gain better insights of these complex protein-lipid interactions, we employed molecular dynamics (MD) simulations using a highly mobile membrane mimetic (HMMM) model that enabled multiple independent spontaneous membrane binding events to be captured. Simulations revealed that CYP2J2 engages with the membrane at the F-G loop through hydrophobic residues Trp-235, Ille-236, and Phe-239. To explore the role of these residues, three F-G loop mutants were modeled from the truncated CYP2J2 construct (Δ34) which included Δ34-I236D, Δ34-F239H and Δ34-I236D/F239H. Using the HMMM coordinates of CYP2J2, the simulations were extended to a full POPC membrane which showed a significant decrease in the depth of insertion for each of the F-G loop mutants. The CYP2J2 F-G loop mutants were expressed in E. coli and were shown to be localized to the cytosolic fraction at a greater percentage relative to construct Δ34. Notably, the functional data demonstrated that the double mutant, Δ34-I236D/F239H, maintained native-like enzymatic activity. The membrane insertion characteristics were examined by monitoring CYP2J2 Trp-quenching fluorescence spectroscopy upon binding nanodiscs containing pyrene phospholipids. Relative to the Δ34 construct, the F-G loop mutants exhibited lower Trp quenching and membrane insertion. Taken together, the results suggest that the mutants exhibit a different membrane topology in agreement with the MD simulations and provide important evidence towards the involvement of key residues in the F-G loop of CYP2J2.

Indexed as

Models, ChemicalMolecular Dynamics SimulationAmino AcidsAmino Acid SubstitutionBinding SitesCytochrome P-450 CYP2J2Cytochrome P-450 Enzyme SystemEnzyme ActivationLipid BilayersProtein BindingProtein ConformationStatic ElectricityStructure-Activity RelationshipAmino AcidsCytochrome P-450 CYP2J2Cytochrome P-450 Enzyme SystemLipid BilayersCYP2J2Cytochrome P450EicosanoidsEpoxygenaseF-G loopNanodiscs

Identifiers

PMID26232558
PMCPMC4559526
OpenAlexW1005226196

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.