Evidence map›Paper›PMID 26232412›Full record

ArticleGenome research2015

Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor.

Brennan Decker, Brian W Davis, Maud Rimbault, Adrienne H Long, Eric Karlins, Vidhya Jagannathan, Rebecca Reiman, Heidi G Parker, Cord Drögemüller, Jason J Corneveaux and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 72 citations in OpenAlex.

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  15. New Guinea highland wild dogs are the original New Guinea singing dogs.Proceedings of the National Academy of Sciences of the United States of America · 2020
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  17. MultipleGenes · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 3 countries.

Brennan DeckerCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA; Department of Public Health and Primary Care, School of Clinical Medicine, University of Cambridge, Cambridge, CB1 8RN, United Kingdom;
Brian W DavisCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA;
Maud RimbaultCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA;
Adrienne H LongPediatric Oncology Branch, National Cancer Institute, Center for Cancer Research, National Institutes of Health, Bethesda, Maryland 20892, USA;
Eric KarlinsCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA;
Vidhya JagannathanInstitute of Genetics, University of Bern, Bern, CH-3001, Switzerland;
Rebecca ReimanThe Translational Genomics Research Institute, Phoenix, Arizona 85004, USA;
Heidi G ParkerCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA;
Cord DrögemüllerInstitute of Genetics, University of Bern, Bern, CH-3001, Switzerland;
Jason J CorneveauxThe Translational Genomics Research Institute, Phoenix, Arizona 85004, USA;
Erica S ChapmanCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA;
Jeffery M TrentThe Translational Genomics Research Institute, Phoenix, Arizona 85004, USA;
Tosso LeebInstitute of Genetics, University of Bern, Bern, CH-3001, Switzerland;
Matthew J HuentelmanThe Translational Genomics Research Institute, Phoenix, Arizona 85004, USA;
Robert K WayneDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, California 90095, USA.
Danielle M KaryadiCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA;
Elaine A OstranderCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA;
National Institutes of Health · USTranslational Genomics Research Institute · USUniversity of Bern · CHUniversity of California, Los Angeles · US

Funding

Comparative Mammalian GenomicsZIAHG200377 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI OSTRANDER, ELAINE · 2012 to 2025
$24.8M
Canine Hereditary Cancer Consortium: From Bark to BedsideUC2CA148149 · NCI · TRANSLATIONAL GENOMICS RESEARCH INST · PI DUESBERY, NICHOLAS S, NEFF, MARK W · 2009 to 2010
$4.3M
Intramural NIH HHSNCI NIH HHS UC2 CA148149
6 · The paper itself

Abstract

Canine transmissible venereal tumor (CTVT) is a parasitic cancer clone that has propagated for thousands of years via sexual transfer of malignant cells. Little is understood about the mechanisms that converted an ancient tumor into the world's oldest known continuously propagating somatic cell lineage. We created the largest existing catalog of canine genome-wide variation and compared it against two CTVT genome sequences, thereby separating alleles derived from the founder's genome from somatic mutations that must drive clonal transmissibility. We show that CTVT has undergone continuous adaptation to its transmissible allograft niche, with overlapping mutations at every step of immunosurveillance, particularly self-antigen presentation and apoptosis. We also identified chronologically early somatic mutations in oncogenesis- and immune-related genes that may represent key initiators of clonal transmissibility. Thus, we provide the first insights into the specific genomic aberrations that underlie CTVT's dogged perseverance in canids around the world.

Indexed as

Genetic Association StudiesAnimalsApoptosisAutoantigensCARD Signaling Adaptor ProteinsCell Adhesion MoleculesCell LineageCell Line, TumorCollagen Type XIDNA-Binding ProteinsDog DiseasesDogsGenetic VariationGenomeGuanine Nucleotide Exchange FactorsHeparan Sulfate ProteoglycansAutoantigensCARD Signaling Adaptor ProteinsCell Adhesion MoleculesCollagen Type XIDNA-Binding ProteinsGuanine Nucleotide Exchange FactorsHeparan Sulfate ProteoglycansMicrofilament ProteinsMyotonin-Protein Kinase

Identifiers

PMID26232412
PMCPMC4617961
OpenAlexW1862805612

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.