Evidence map›Paper›PMID 26231923›Full record

ArticleBiochimica et biophysica acta2015

Functional characterization of zebrafish cytochrome P450 1 family proteins expressed in yeast.

John J Stegeman, Lars Behrendt, Bruce R Woodin, Akira Kubota, Benjamin Lemaire, Denis Pompon, Jared V Goldstone, Philippe Urban

Open access · bronzeAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

John J StegemanBiology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA. Electronic address: jstegeman@whoi.edu.
Lars BehrendtBiology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Bruce R WoodinBiology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Akira KubotaBiology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Benjamin LemaireBiology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Denis PomponLaboratoire d'Ingenierie des Systèmes Biologiques et des Procédés, CNRS UMR 5504, Campus INSA, 135 Avenue de Rangueil, F-31400 Toulouse, France; Université de Toulouse, 135 Avenue de Rangueil, F-31077 Toulouse, France; INSA, UPS, INP, LISBP, 135 Avenue de Rangueil, F-31077 Toulouse, France; INRA, UMR792 Ingénierie des Systèmes Biologiques et des Procédés, F-31400 Toulouse, France.
Jared V GoldstoneBiology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Philippe UrbanLaboratoire d'Ingenierie des Systèmes Biologiques et des Procédés, CNRS UMR 5504, Campus INSA, 135 Avenue de Rangueil, F-31400 Toulouse, France; Université de Toulouse, 135 Avenue de Rangueil, F-31077 Toulouse, France; INSA, UPS, INP, LISBP, 135 Avenue de Rangueil, F-31077 Toulouse, France; INRA, UMR792 Ingénierie des Systèmes Biologiques et des Procédés, F-31400 Toulouse, France.
Woods Hole Oceanographic Institution · USUniversité Toulouse III - Paul Sabatier · FR

Funding

Training CoreP42ES007381 · NIEHS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SHERR, DAVID H · 1995 to 2019
$46.1M
CYP Genes and the Generation of Oxidative StressR01ES015912 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI STEGEMAN, JOHN J · 2007 to 2011
$3.1M
WHCOHH: Harmful algal bloom dynamics and epigenetic mechanism of toxin actionP01ES021923 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI STEGEMAN, JOHN J · 2012 to 2016
$2.1M
NIEHS NIH HHS P01 ES021923NIEHS NIH HHS P42 ES007381NIEHS NIH HHS R01 ES015912
6 · The paper itself

Abstract

backgroundZebrafish express five cytochrome P450 1 genes: CYP1A, CYP1B1, CYP1C1, CYP1C2, inducible by aryl hydrocarbon receptor agonists, and CYP1D1, a constitutively expressed CYP1A-like gene. We examined substrate selectivity of CYP1s expressed in yeast.

methodsCYP1s were expressed in W(R) yeast, engineered to over-express P450 reductase, via pYES/DEST52 and via pYeDP60. Microsomal fractions from transformed yeast were examined for activity with fluorogenic substrates, benzo[a]pyrene and testosterone. Modeling and docking approaches were used to further evaluate sites of oxidation on benzo[a]pyrene and testosterone.

resultsCYP1s expressed in yeast dealkylated ethoxy-, methoxy-, pentoxy- and benzoxy-resorufin (EROD, MROD, PROD, BROD). CYP1A and CYP1C2 had the highest rates of EROD activity, while PROD and BROD activities were low for all five CYP1s. The relative rates of resorufin dealkylation by CYP1C1, CYP1C2 and CYP1D1 expressed via pYeDP60 were highly similar to relative rates obtained with pYES/DEST52-expressed enzymes. CYP1C1 and CYP1C2 dealkylated substituted coumarins and ethoxy-fluorescein-ethylester, while CYP1D1 did not. The CYP1Cs and CYP1D1 co-expressed with epoxide hydrolase oxidized BaP with different rates and product profiles, and all three produced BaP-7,8,9,10-tetrol. The CYP1Cs but not CYP1D1 metabolized testosterone to 6β-OH-testosterone. However, CYP1D1 formed an unidentified testosterone metabolite better than the CYP1Cs. Testosterone and BaP docked to CYP homology models with poses consistent with differing product profiles.

conclusionsYeast-expressed zebrafish CYP1s will be useful in determining further functionality with endogenous and xenobiotic compounds. GENERAL SIGNIFICANCE: Determining the roles of zebrafish CYP1s in physiology and toxicology depends on knowing the substrate selectivity of these enzymes.

Indexed as

AnimalsBenzo(a)pyreneCytochrome P-450 Enzyme SystemModels, MolecularMolecular Docking SimulationProtein Structure, TertiarySaccharomyces cerevisiaeSubstrate SpecificityTestosteroneZebrafishBenzo(a)pyreneCytochrome P-450 Enzyme SystemTestosteroneCytochrome P450 family 1Recombinant CYP1 proteinsSubstrate selectivityYeastZebrafish

Identifiers

PMID26231923
PMCPMC4587093
OpenAlexW982819012

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.