Evidence map›Paper›PMID 26231219›Full record

ArticleHuman molecular genetics2015

Altering 5-hydroxymethylcytosine modification impacts ischemic brain injury.

Zhigang Miao, Yuquan He, Ning Xin, Miao Sun, Li Chen, Li Lin, Jizhen Li, Jiming Kong, Peng Jin, Xingshun Xu

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
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  8. Review
  9. Targeting Nr2e3 to Modulate Tet2 Expression: Therapeutic Potential for Depression Treatment.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  10. Review
  11. Review
  12. Article
  13. Review
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  15. GluA1 Degradation by Autophagy Contributes to Circadian Rhythm Effects on Cerebral Ischemia Injury.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
  16. Article
  17. Article
  18. Epigenetic mechanisms and potential therapeutic targets in stroke.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2022
    Review
  19. The Role of DNA Methylation in Stroke Recovery.International journal of molecular sciences · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Zhigang MiaoJiangsu Key Laboratory of Translational Research and Therapy for Neuro-Psycho-Diseases, Department of Neurology, The Second Affiliated Hospital of Soochow University, Suzhou City, Jiangsu Province 215004, P.R. China, Institute of Neuroscience, Soochow University, Suzhou City, Jiangsu Province 215123, P.R. China.
Yuquan HeDepartment of Cardiology, China-Japan Union Hospital of Jilin University, Changchun, Jilin, P.R. China.
Ning XinJiangsu Key Laboratory of Translational Research and Therapy for Neuro-Psycho-Diseases, Department of Neurology, The Second Affiliated Hospital of Soochow University, Suzhou City, Jiangsu Province 215004, P.R. China.
Miao SunInstitute for Fetology, The First Affiliated Hospital of Soochow University, Suzhou City, Jiangsu, P.R. China.
Li ChenDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Li LinDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Jizhen LiJiangsu Key Laboratory of Translational Research and Therapy for Neuro-Psycho-Diseases, Department of Neurology, The Second Affiliated Hospital of Soochow University, Suzhou City, Jiangsu Province 215004, P.R. China, Department of Neurology, Suzhou Kowloon Hospital, Suzhou City, Jiangsu Province 215021, P.R. China and.
Jiming KongDepartment of Human Anatomy and Cell Science, Faculty of Medicine, University of Manitoba, Winnipeg, Manitoba, Canada.
Peng JinDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA, xingshunxu@suda.edu.cn peng.jin@emory.edu.
Xingshun XuJiangsu Key Laboratory of Translational Research and Therapy for Neuro-Psycho-Diseases, Department of Neurology, The Second Affiliated Hospital of Soochow University, Suzhou City, Jiangsu Province 215004, P.R. China, Institute of Neuroscience, Soochow University, Suzhou City, Jiangsu Province 215123, P.R. China, xingshunxu@suda.edu.cn peng.jin@emory.edu.
Emory University · USSoochow University · CNSecond Affiliated Hospital of Soochow University · CNJilin University · CNUniversity of Manitoba · CA

Funding

Tet-mediated Epigenetic Modulation in AutismR01MH102690 · NIMH · EMORY UNIVERSITY · PI JIN, PENG, WARREN, STEPHEN T. · 2014 to 2017
$2.6M
5-Hydroxymethylcytosine in NeurodevelopmentR01NS079625 · NINDS · EMORY UNIVERSITY · PI JIN, PENG · 2012 to 2016
$1.7M
NIMH NIH HHS R01 MH102690NINDS NIH HHS R01 NS079625
6 · The paper itself

Abstract

Epigenetic modifications such as cytosine methylation and histone modification are linked to the pathology of ischemic brain injury. Recent research has implicated 5-hydroxymethylcytosine (5hmC), a DNA base derived from 5-methylcytosine (5mC) via oxidation by ten-eleven translocation (Tet) enzymes, in DNA methylation-related plasticity. Here we show that 5hmC abundance was increased after ischemic injury, and Tet2 was responsible for this increase; furthermore, inhibiting Tet2 expression abolished the increase of 5hmC caused by ischemic injury. The decrease in 5hmC modifications from inhibiting Tet2 activity was accompanied by increased infarct volume after ischemic injury. Genome-wide profiling of 5hmC revealed differentially hydroxymethylated regions (DhMRs) associated with ischemic injury, and DhMRs were enriched among the genes involved in cell junction, neuronal morphogenesis and neurodevelopment. In particular, we found that 5hmC modifications at the promoter region of brain-derived neurotrophic factor (BDNF) increased, which was accompanied by increased BDNF mRNA, whereas the inhibition of Tet2 reduced BDNF mRNA and protein expression. Finally, we show that the abundance of 5hmC in blood samples from patients with acute ischemic stroke was also significantly increased. Together, these data suggest that 5hmC modification could serve as both a potential biomarker and a therapeutic target for the treatment of ischemic stroke.

Indexed as

DNA Methylation5-MethylcytosineAnimalsBrain-Derived Neurotrophic FactorBrain IschemiaCytosineDioxygenasesDNA-Binding ProteinsEpigenesis, GeneticMaleMicePromoter Regions, GeneticProto-Oncogene ProteinsReperfusion Injury5-hydroxymethylcytosine5-MethylcytosineBDNF protein, humanBrain-Derived Neurotrophic FactorCytosineDioxygenasesDNA-Binding ProteinsProto-Oncogene ProteinsTET2 protein, human

Identifiers

PMID26231219
PMCPMC4581609
OpenAlexW1940421961

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.