Evidence map›Paper›PMID 26231210›Full record

ArticleThe Journal of biological chemistry2015

Mechanistic Insights into Glucan Phosphatase Activity against Polyglucan Substrates.

David A Meekins, Madushi Raththagala, Kyle D Auger, Benjamin D Turner, Diana Santelia, Oliver Kötting, Matthew S Gentry, Craig W Vander Kooi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  6. Review
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  8. Article
  9. Review
  10. Repression ofFrontiers in plant science · 2018
    Article
  11. Review
  12. Article
  13. Structural biology of glucan phosphatases from humans to plants.Current opinion in structural biology · 2016
    Review
  14. Unique carbohydrate binding platforms employed by the glucan phosphatases.Cellular and molecular life sciences : CMLS · 2016
    Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

David A MeekinsFrom the Department of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536.
Madushi RaththagalaFrom the Department of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536.
Kyle D AugerFrom the Department of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536.
Benjamin D TurnerFrom the Department of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536.
Diana SanteliaInstitute of Plant Biology, University of Zürich, CH-8008, Zürich, Switzerland, and.
Oliver KöttingInstitute of Agricultural Sciences, Eidgenössische Technische Hochschule (ETH) Zürich, CH-8092, Zürich, Switzerland.
Matthew S GentryFrom the Department of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536, matthew.gentry@uky.edu.
Craig W Vander KooiFrom the Department of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536, craig.vanderkooi@uky.edu.
University of Kentucky · USETH Zurich · CHUniversity of Zurich · CH

Funding

Center for Biomedical Research Excellence in the Molecular Basis of Human DiseaseP20GM103486 · NIGMS · UNIVERSITY OF KENTUCKY · PI LOUIS HERSH, LOUIS HERSH LOUIS HERSH · 2012 to 2013
$4.2M
Regulation, Signaling, and Dynamics of Glucan PhosphatasesR01NS070899 · NINDS · UNIVERSITY OF KENTUCKY · PI GENTRY, MATTHEW S. · 2010 to 2019
$3.6M
NIGMS NIH HHS P20 GM103486NIGMS NIH HHS P20GM103486NINDS NIH HHS R01 NS070899NINDS NIH HHS R01NS070899
6 · The paper itself

Abstract

Glucan phosphatases are central to the regulation of starch and glycogen metabolism. Plants contain two known glucan phosphatases, Starch EXcess4 (SEX4) and Like Sex Four2 (LSF2), which dephosphorylate starch. Starch is water-insoluble and reversible phosphorylation solubilizes its outer surface allowing processive degradation. Vertebrates contain a single known glucan phosphatase, laforin, that dephosphorylates glycogen. In the absence of laforin, water-soluble glycogen becomes insoluble, leading to the neurodegenerative disorder Lafora Disease. Because of their essential role in starch and glycogen metabolism glucan phosphatases are of significant interest, yet a comparative analysis of their activities against diverse glucan substrates has not been established. We identify active site residues required for specific glucan dephosphorylation, defining a glucan phosphatase signature motif (CζAGΨGR) in the active site loop. We further explore the basis for phosphate position-specific activity of these enzymes and determine that their diverse phosphate position-specific activity is governed by the phosphatase domain. In addition, we find key differences in glucan phosphatase activity toward soluble and insoluble polyglucan substrates, resulting from the participation of ancillary glucan-binding domains. Together, these data provide fundamental insights into the specific activity of glucan phosphatases against diverse polyglucan substrates.

Indexed as

Amino Acid MotifsArabidopsisArabidopsis ProteinsDual-Specificity PhosphatasesGlycogenHumansProtein Structure, TertiaryProtein Tyrosine Phosphatases, Non-ReceptorStarchArabidopsis ProteinsAt3g52180 protein, ArabidopsisDual-Specificity PhosphatasesEPM2A protein, humanGlycogenLSF2 protein, ArabidopsisProtein Tyrosine Phosphatases, Non-ReceptorStarchcarbohydrate-binding proteincarbohydrate metabolismglycogenLafora disease (Lafora progressive myoclonic epilepsy, MELF)phosphatasestarchsubstrate specificity

Identifiers

PMID26231210
PMCPMC4645622
OpenAlexW1948598933

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.