Evidence map›Paper›PMID 26230368›Full record

ArticleJournal of the American Chemical Society2015

Evolution of Efficient Modular Polyketide Synthases by Homologous Recombination.

Joseph A Chemler, Ashootosh Tripathi, Douglas A Hansen, Mark O'Neil-Johnson, Russell B Williams, Courtney Starks, Sung Ryeol Park, David H Sherman

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 46 citations in OpenAlex.

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  7. Recent trends in biocatalysis.Chemical Society reviews · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Joseph A Chemler
Ashootosh Tripathi
Douglas A Hansen
Mark O'Neil-JohnsonSequoia Sciences, Inc. , 1912 Innerbelt Business Center Drive, Saint Louis, Missouri 63114, United States.
Russell B WilliamsSequoia Sciences, Inc. , 1912 Innerbelt Business Center Drive, Saint Louis, Missouri 63114, United States.
Courtney StarksSequoia Sciences, Inc. , 1912 Innerbelt Business Center Drive, Saint Louis, Missouri 63114, United States.
Sung Ryeol Park
David H Sherman
Sequoia Sciences (United States) · US

Funding

Molecular Analysis of Modular Polyketide SynthasesR01GM076477 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHERMAN, DAVID H, SMITH, JANET L. · 2006 to 2018
$5.2M
Structure and Engineering of Natural Product Cytochrome P450 EnzymesR01GM078553 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MONTGOMERY, JOHN, PODUST, LARISSA M. · 2007 to 2015
$2.9M
Engineering hybrid polyketide synthase systems using high affinity DNA binding doF32GM095065 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHEMLER, JOSEPH ANTHONY · 2011 to 2012
$101k
NIGMS NIH HHS F32 GM095065NIGMS NIH HHS GM078553NIGMS NIH HHS GM095065NIGMS NIH HHS R01 GM076477NIGMS NIH HHS R01 GM078553
6 · The paper itself

Abstract

The structural scaffolds of many complex natural products are produced by multifunctional type I polyketide synthase (PKS) enzymes that operate as biosynthetic assembly lines. The modular nature of these mega-enzymes presents an opportunity to construct custom biocatalysts built in a lego-like fashion by inserting, deleting, or exchanging native or foreign domains to produce targeted variants of natural polyketides. However, previously engineered PKS enzymes are often impaired resulting in limited production compared to native systems. Here, we show a versatile method for generating and identifying functional chimeric PKS enzymes for synthesizing custom macrolactones and macrolides. PKS genes from the pikromycin and erythromycin pathways were hybridized in Saccharomyces cerevisiae to generate hybrid libraries. We used a 96-well plate format for plasmid purification, transformations, sequencing, protein expression, in vitro reactions and analysis of metabolite formation. Active chimeric enzymes were identified with new functionality. Streptomyces venezuelae strains that expressed these PKS chimeras were capable of producing engineered macrolactones. Furthermore, a macrolactone generated from selected PKS chimeras was fully functionalized into a novel macrolide analogue. This method permits the engineering of PKS pathways as modular building blocks for the production of new antibiotic-like molecules.

Indexed as

Evolution, MolecularHomologous RecombinationErythromycinEscherichia coliMacrolidesPolyketide SynthasesProtein EngineeringSaccharomyces cerevisiaeStreptomycesErythromycinMacrolidespicromycinPolyketide Synthases

Identifiers

PMID26230368
PMCPMC4666801
OpenAlexW2398193949

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.