Evidence map›Paper›PMID 26230096›Full record

ArticlePloS one2015

A Single RNaseIII Domain Protein from Entamoeba histolytica Has dsRNA Cleavage Activity and Can Help Mediate RNAi Gene Silencing in a Heterologous System.

Justine M Pompey, Bardees Foda, Upinder Singh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Life and Death of mRNA Molecules inFrontiers in cellular and infection microbiology · 2018
    Review
  7. Article
  8. Recent advances inF1000Research · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Justine M PompeyDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America.
Bardees FodaDivision of Infectious Diseases, Department of Internal Medicine, Stanford University School of Medicine, Stanford, California, United States of America; Molecular Genetics and Enzymology Department, National Research Centre, Dokki, Egypt.
Upinder SinghDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America; Division of Infectious Diseases, Department of Internal Medicine, Stanford University School of Medicine, Stanford, California, United States of America.
Stanford University · US

Funding

MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
Investigating Entamoeba histolytica Colonic PathogenesisR01AI053724 · NIAID · STANFORD UNIVERSITY · PI SINGH, UPINDER · 2003 to 2012
$3.8M
Identification of Entamoeba small RNAs by pyrosequencingR21AI085178 · NIAID · STANFORD UNIVERSITY · PI SINGH, UPINDER · 2010 to 2011
$438k
NIAID NIH HHS AI085178NIAID NIH HHS AI53724NIAID NIH HHS R01 AI053724NIAID NIH HHS R21 AI085178NIAID NIH HHS T32 AI007328NIAID NIH HHS T32 AI07328
6 · The paper itself

Abstract

Dicer enzymes process double-stranded RNA (dsRNA) into small RNAs that target gene silencing through the RNA interference (RNAi) pathway. Dicer enzymes are complex, multi-domain RNaseIII proteins, however structural minimalism of this protein has recently emerged in parasitic and fungal systems. The most minimal Dicer, Saccharomyces castellii Dicer1, has a single RNaseIII domain and two double stranded RNA binding domains. In the protozoan parasite Entamoeba histolytica 27nt small RNAs are abundant and mediate silencing, yet no canonical Dicer enzyme has been identified. Although EhRNaseIII does not exhibit robust dsRNA cleavage in vitro, it can process dsRNA in the RNAi-negative background of Saccharomyces cerevisiae, and in conjunction with S. castellii Argonaute1 can partially reconstitute the RNAi pathway. Thus, although EhRNaseIII lacks the domain architecture of canonical or minimal Dicer enzymes, it has dsRNA processing activity that contributes to gene silencing via RNAi. Our data advance the understanding of small RNA biogenesis in Entamoeba as well as broaden the spectrum of non-canonical Dicer enzymes that contribute to the RNAi pathway.

Indexed as

Entamoeba histolyticaGene SilencingGenes, ProtozoanOrganisms, Genetically ModifiedRibonuclease IIIRNA CleavageRNA, Double-StrandedRNA InterferenceSaccharomycesSaccharomyces cerevisiaeRibonuclease IIIRNA, Double-Stranded

Identifiers

PMID26230096
PMCPMC4521922
OpenAlexW1937439465

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.