Evidence map›Paper›PMID 26228695›Full record

ArticleBMC microbiology2015

Variability in gene cassette patterns of class 1 and 2 integrons associated with multi drug resistance patterns in Staphylococcus aureus clinical isolates in Tehran-Iran.

Mahdi Mostafa, Seyed Davar Siadat, Fereshteh Shahcheraghi, Farzam Vaziri, Alireza Japoni-Nejad, Jalil Vand Yousefi, Bahareh Rajaei, Elnaz Harifi Mood, Nayyereh Ebrahim zadeh, Arfa Moshiri and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Global prevalence of macrolide-resistantFrontiers in microbiology · 2025
    Pooled it
  2. Genetic architecture and functional dynamics of integrons in Staphylococcus aureus resistance.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2026
    Review
  3. Article
  4. Review
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  7. Antimicrobial resistance and genetic diversity ofOne health (Amsterdam, Netherlands) · 2022
    Article
  8. Anti-Iranian journal of basic medical sciences · 2022
    Article
  9. Article
  10. Article
  11. Antibiotic resistance and typing ofIranian journal of basic medical sciences · 2020
    Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Mahdi MostafaDepartment of Mycobacteriology & Pulmonary Research, Pasteur Institute of Iran, Tehran-Iran, No. 358, 12th Farwardin Ave, Jomhhoori St, Tehran, 1316943551, Iran. m.mostafa@yahoo.com.
Seyed Davar SiadatDepartment of Mycobacteriology & Pulmonary Research, Pasteur Institute of Iran, Tehran-Iran, No. 358, 12th Farwardin Ave, Jomhhoori St, Tehran, 1316943551, Iran. d.siadat@gmail.com.
Fereshteh ShahcheraghiDepartment of Microbiology, Pasteur Institute of Iran, Tehran, Iran. shahcheraghifereshteh@yahoo.com.
Farzam VaziriDepartment of Mycobacteriology & Pulmonary Research, Pasteur Institute of Iran, Tehran-Iran, No. 358, 12th Farwardin Ave, Jomhhoori St, Tehran, 1316943551, Iran. farzam_vaziri@yahoo.com.
Alireza Japoni-NejadDepartment of Mycobacteriology & Pulmonary Research, Pasteur Institute of Iran, Tehran-Iran, No. 358, 12th Farwardin Ave, Jomhhoori St, Tehran, 1316943551, Iran. alizh63@yahoo.com.
Jalil Vand YousefiDepartment of Microbiology, Karaj branch, Islamic Azad University, Karaj, Iran. j.Yousefi@yahoo.com.
Bahareh RajaeiNational Institute of Genetic Engineering and Biotechnology, Tehran, Iran. Rajaei@yahoo.com.
Elnaz Harifi MoodDepartment of Mycobacteriology & Pulmonary Research, Pasteur Institute of Iran, Tehran-Iran, No. 358, 12th Farwardin Ave, Jomhhoori St, Tehran, 1316943551, Iran. elnazharifimood@gmail.com.
Nayyereh Ebrahim zadehDepartment of Mycobacteriology & Pulmonary Research, Pasteur Institute of Iran, Tehran-Iran, No. 358, 12th Farwardin Ave, Jomhhoori St, Tehran, 1316943551, Iran. nebrahimzadeh50@gmail.com.
Arfa MoshiriBiotechnology Department, Faculty of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran. arfa.moshiri@gmail.com.
Seyed Alireza Seyed SiamdoustDepartment of Anesthesiology, Iran University of Medical Sciences, Tehran, Iran. s.siamdoust@yahoo.com.
Mohamad RahbarDepartment of Microbiology, Reference Health Laboratories Research Center, Ministry of Health and Medical Education, Tehran, Iran. m.rahbar@yahoo.com.
Pasteur Institute of Iran · IRIran University of Medical Sciences · IRIslamic Azad University, Karaj · IRMinistry of Health and Medical Education · IRNational Institute of Genetic Engineering and Biotechnology · IRShahid Beheshti University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTo investigate antibiotic resistance, the occurrence and distribution of class 1 and 2 integrons in multidrug- resistant Staphylococcus aureus isolates from hospitals in Tehran, Iran. The isolates were examined for susceptibility to antimicrobial agents. The mecA gene, class 1 and 2 integrons were detected by PCR. Integrase positive strains were further analysed for the presence of resistance gene cassettes using specific primers and were sequenced.

resultsAmong 139 S.aureus isolates, 109 (78.4 %) and 112 (80.5 %) strains were considered as multidrug resistant and mecA positive, respectively. Class 1 integrons and internal variable regions were found in 72.6 % (101/139) and 97 % (98/101) and class 2 integrons and variable regions also in 35.2 % (49/139) and 65.3 % (32/49) of S.aureus clinical isolates, respectively. Twelve distinct cassette arrays were found, containing genes encoding resistance to β-lactams, aminoglycosides, streptothricin, trimethoprim, chloramphenicol,a putative glucose dehydrogenase precursor and a protein with unknown function. Gene cassette arrays aadB, aadA2 and dhfrA1-sat2-aadA1 were common in S.aureus isolates. We detected a completely new gene cassettes which contained aadB, oxa2, aacA4, orfD-aacA4-catB8, aadB-catB3, orfD-aacA4 and aadB-aadA1-cmlA6 of class 1 and dhfrA1-sat2-aadA1, dhfrA11, dhfrA1-sat2 of class 2 integrons.

conclusionsThis is the first study to report carriage of class 1 and 2 integrons and associated gene cassettes among in S.aureus isolates from Iran.

Indexed as

Drug Resistance, Multiple, BacterialIntegronsAnti-Bacterial AgentsDNA, BacterialGene OrderGenes, BacterialGenotypeIranMolecular Sequence DataPolymerase Chain ReactionSequence Analysis, DNAStaphylococcal InfectionsStaphylococcus aureusAnti-Bacterial AgentsDNA, Bacterial

Identifiers

PMID26228695
PMCPMC4521504
OpenAlexW1547644056

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.